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Yorodumi- PDB-3dpr: Human rhinovirus 2 bound to a concatamer of the VLDL receptor mod... -
+Open data
-Basic information
Entry | Database: PDB / ID: 3dpr | ||||||
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Title | Human rhinovirus 2 bound to a concatamer of the VLDL receptor module V3 | ||||||
Components |
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Keywords | VIRUS / HUMAN RHINOVIRUS / VLDL-RECEPTOR / VIRUS-PROTEIN COMPLEX / ICOSAHEDRAL VIRUS / ATP-binding / Capsid protein / Covalent protein-RNA linkage / Cytoplasmic vesicle / Helicase / Host-virus interaction / Hydrolase / Lipoprotein / Membrane / Myristate / Nucleotide-binding / Nucleotidyltransferase / Phosphoprotein / Protease / RNA replication / RNA-binding / RNA-directed RNA polymerase / Thiol protease / Transferase / Virion / Cholesterol metabolism / Coated pit / EGF-like domain / Endocytosis / Glycoprotein / Lipid metabolism / Lipid transport / Receptor / Steroid metabolism / Transmembrane / Transport / VLDL | ||||||
Function / homology | Function and homology information reelin receptor activity / VLDL clearance / glycoprotein transport / very-low-density lipoprotein particle receptor activity / very-low-density lipoprotein particle clearance / ventral spinal cord development / Reelin signalling pathway / very-low-density lipoprotein particle binding / reelin-mediated signaling pathway / low-density lipoprotein particle receptor activity ...reelin receptor activity / VLDL clearance / glycoprotein transport / very-low-density lipoprotein particle receptor activity / very-low-density lipoprotein particle clearance / ventral spinal cord development / Reelin signalling pathway / very-low-density lipoprotein particle binding / reelin-mediated signaling pathway / low-density lipoprotein particle receptor activity / very-low-density lipoprotein particle / positive regulation of dendrite development / dendrite morphogenesis / cargo receptor activity / lipid transport / apolipoprotein binding / symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of RIG-I activity / clathrin-coated pit / cholesterol metabolic process / receptor-mediated endocytosis / VLDLR internalisation and degradation / picornain 2A / symbiont-mediated suppression of host mRNA export from nucleus / ribonucleoside triphosphate phosphatase activity / symbiont genome entry into host cell via pore formation in plasma membrane / picornain 3C / T=pseudo3 icosahedral viral capsid / host cell cytoplasmic vesicle membrane / endocytosis involved in viral entry into host cell / memory / calcium-dependent protein binding / : / nucleoside-triphosphate phosphatase / protein complex oligomerization / monoatomic ion channel activity / nervous system development / RNA helicase activity / DNA replication / receptor complex / induction by virus of host autophagy / RNA-directed RNA polymerase / symbiont-mediated suppression of host gene expression / lysosomal membrane / viral RNA genome replication / cysteine-type endopeptidase activity / RNA-dependent RNA polymerase activity / DNA-templated transcription / host cell nucleus / calcium ion binding / virion attachment to host cell / structural molecule activity / signal transduction / proteolysis / RNA binding / ATP binding / membrane / metal ion binding / plasma membrane Similarity search - Function | ||||||
Biological species | Homo sapiens (human) Human rhinovirus 2 | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / molecular replacement / Resolution: 3.5 Å | ||||||
Authors | Querol-Audi, J. / Pous, J. / Fita, I. / Verdaguer, N. | ||||||
Citation | Journal: Febs Lett. / Year: 2009 Title: Minor group human rhinovirus-receptor interactions: geometry of multimodular attachment and basis of recognition Authors: Querol-Audi, J. / Konecsni, T. / Pous, J. / Carugo, O. / Fita, I. / Verdaguer, N. / Blaas, D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 3dpr.cif.gz | 144.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb3dpr.ent.gz | 110.9 KB | Display | PDB format |
PDBx/mmJSON format | 3dpr.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dp/3dpr ftp://data.pdbj.org/pub/pdb/validation_reports/dp/3dpr | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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3 |
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4 |
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5 |
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6 | x 30
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Unit cell |
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Symmetry | Point symmetry: (Schoenflies symbol: I (icosahedral)) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Noncrystallographic symmetry (NCS) | NCS oper:
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