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Open data
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Basic information
Entry | Database: PDB / ID: 2z6g | ||||||
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Title | Crystal Structure of a Full-Length Zebrafish Beta-Catenin | ||||||
![]() | B-catenin | ||||||
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Function / homology | ![]() Degradation of beta-catenin by the destruction complex / : / TCF dependent signaling in response to WNT / Formation of the beta-catenin:TCF transactivating complex / LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production / Deactivation of the beta-catenin transactivating complex / : / VEGFR2 mediated vascular permeability / ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Xing, Y. / Takemaru, K. / Liu, J. / Zheng, J. / Moon, R. / Xu, W. | ||||||
![]() | ![]() Title: Crystal Structure of a Full-Length beta-Catenin Authors: Xing, Y. / Takemaru, K. / Liu, J. / Berndt, J.D. / Zheng, J.J. / Moon, R.T. / Xu, W. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 117.3 KB | Display | ![]() |
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PDB format | ![]() | 89.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Related structure data | ![]() 2z6hC ![]() 1i7xS C: citing same article ( S: Starting model for refinement |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 85634.336 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.9 Å3/Da / Density % sol: 57.64 % |
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Crystal grow![]() | Temperature: 298 K / Method: vapor diffusion, hanging drop / pH: 7.5 Details: 0.1M TRIS pH 7.5, 10% Ethanol, 25MM Spermine tetrahydrochloride, pH 7.50, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
-Data collection
Diffraction | Mean temperature: 170 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ANL-ECT / Detector: CCD |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 3.4→30 Å / Num. all: 12659 / Num. obs: 11140 / % possible obs: 75.8 % / Observed criterion σ(F): 1 / Observed criterion σ(I): 1 / Redundancy: 3.4 % / Biso Wilson estimate: 28.8 Å2 |
Reflection shell | Resolution: 3.4→3.52 Å / % possible all: 90.3 |
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Processing
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Refinement | Method to determine structure![]() ![]() Starting model: PDB ENTRY 1I7X Resolution: 3.4→29.69 Å / Rfactor Rfree error: 0.013 / Data cutoff high absF: 483797.84 / Data cutoff low absF: 0 / Isotropic thermal model: RESTRAINED / Cross valid method: THROUGHOUT / σ(F): 1 / Stereochemistry target values: Engh & Huber
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 15.38 Å2 / ksol: 0.28 e/Å3 | ||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 66.3 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 3.4→29.69 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 3.4→3.61 Å / Rfactor Rfree error: 0.047 / Total num. of bins used: 6
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Xplor file |
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