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- PDB-2shk: THE THREE-DIMENSIONAL STRUCTURE OF SHIKIMATE KINASE FROM ERWINIA ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2shk | ||||||
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Title | THE THREE-DIMENSIONAL STRUCTURE OF SHIKIMATE KINASE FROM ERWINIA CHRYSANTHEMI COMPLEXED WITH ADP | ||||||
![]() | SHIKIMATE KINASE![]() | ||||||
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Function / homology | ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Krell, T. / Coggins, J.R. / Lapthorn, A.J. | ||||||
![]() | ![]() Title: Crystallization and preliminary X-ray crystallographic analysis of shikimate kinase from Erwinia chrysanthemi. Authors: Krell, T. / Coyle, J.E. / Horsburgh, M.J. / Coggins, J.R. / Lapthorn, A.J. #1: ![]() Title: The Three-Dimensional Structure of Shikimate Kinase Authors: Krell, T. / Coggins, J.R. / Lapthorn, A.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 76.2 KB | Display | ![]() |
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PDB format | ![]() | 61.3 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS oper: (Code: given Matrix: (-0.50361, -0.85848, 0.096889), Vector ![]() |
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Components
#1: Protein | ![]() Mass: 18975.754 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() #2: Chemical | ChemComp-MG / #3: Chemical | ChemComp-ADP / | ![]() #4: Water | ChemComp-HOH / | ![]() Compound details | THE GAP IN THE MOLECULAR STRUCTURE CORRESPONDS TO RESIDUES OF THE LID-DOMAIN. BY ANALOGY TO ...THE GAP IN THE MOLECULAR STRUCTURE CORRESPOND | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.6 Å3/Da / Density % sol: 66 % | ||||||||||||||||||||||||||||||||||||||||||
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Crystal grow![]() | pH: 7.1 Details: 2.16M NACL, 100MM HEPES BUFFER PH 7.1, 5MM ADP, 5MM SHIKIMATE, 10MM MGCL2 | ||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS pH: 7.6 / Method: vapor diffusion, sitting drop | ||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: IMAGE PLATE / Date: Nov 1, 1995 / Details: MIRROR |
Radiation | Monochromator: SI(111) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength![]() |
Reflection | Resolution: 2.6→28 Å / Num. obs: 17402 / % possible obs: 98.8 % / Observed criterion σ(I): 0 / Redundancy: 6.3 % / Rmerge(I) obs: 0.107 / Rsym value: 0.107 / Net I/σ(I): 10 |
Reflection shell | Resolution: 2.6→2.69 Å / Redundancy: 5 % / Rmerge(I) obs: 0.65 / Mean I/σ(I) obs: 2 / Rsym value: 0.65 / % possible all: 97 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Refinement step | Cycle: LAST / Resolution: 2.6→20 Å
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