BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 ... BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE.
Remark 999
SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG.
解像度: 1.28→25.959 Å / Num. obs: 73297 / % possible obs: 78.3 % / Biso Wilson estimate: 13.84 Å2 / Rmerge(I) obs: 0.03 / Net I/σ(I): 9.99
反射 シェル
Diffraction-ID: 1
解像度 (Å)
最高解像度 (Å)
Rmerge(I) obs
Mean I/σ(I) obs
Num. measured obs
Num. unique all
% possible all
1.28-1.33
0.422
1.62
2396
2499
28.2
1.33-1.38
0.351
2.2
3324
3396
38.6
1.38-1.44
0.266
2.9
4788
4917
54.9
1.44-1.52
0.21
3.6
7986
7971
82
1.52-1.61
0.143
5
7984
8049
89.4
1.61-1.74
0.097
7
8942
8922
91.8
1.74-1.91
0.061
10.1
8236
8388
92.7
1.91-2.19
0.036
15
8796
8925
93.9
2.19
0.028
18.6
8610
8840
94.3
-
位相決定
位相決定
手法: 多波長異常分散
-
解析
ソフトウェア
名称
バージョン
分類
NB
MolProbity
3beta29
モデル構築
SHELX
位相決定
REFMAC
5.2.0005
精密化
XSCALE
データスケーリング
PDB_EXTRACT
2
データ抽出
MAR345
CCD
データ収集
SHELXD
位相決定
SOLVE
位相決定
精密化
構造決定の手法: 多波長異常分散 / 解像度: 1.28→25.959 Å / Cor.coef. Fo:Fc: 0.97 / Cor.coef. Fo:Fc free: 0.967 / SU B: 1.712 / SU ML: 0.034 / TLS residual ADP flag: LIKELY RESIDUAL / 交差検証法: THROUGHOUT / σ(F): 0 / ESU R: 0.056 / ESU R Free: 0.054 立体化学のターゲット値: MAXIMUM LIKELIHOOD WITH PHASES 詳細: 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE ...詳細: 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 4. SO4 AND GLYCEROL WERE MODELED BASED ON CRYSTALLIZATION AND CRYOPROTECTION CONDITIONS.
Rfactor
反射数
%反射
Selection details
Rfree
0.178
1905
5.1 %
RANDOM
Rwork
0.167
-
-
-
all
0.167
-
-
-
obs
0.167
37027
79.3 %
-
溶媒の処理
イオンプローブ半径: 0.8 Å / 減衰半径: 0.8 Å / VDWプローブ半径: 1.2 Å / 溶媒モデル: MASK
原子変位パラメータ
Biso mean: 14.664 Å2
Baniso -1
Baniso -2
Baniso -3
1-
-0.08 Å2
0.16 Å2
-0.05 Å2
2-
-
0.24 Å2
0.34 Å2
3-
-
-
-0.02 Å2
精密化ステップ
サイクル: LAST / 解像度: 1.28→25.959 Å
タンパク質
核酸
リガンド
溶媒
全体
原子数
1375
0
16
179
1570
拘束条件
Refine-ID
タイプ
Dev ideal
Dev ideal target
数
X-RAY DIFFRACTION
r_bond_refined_d
0.02
0.022
1504
X-RAY DIFFRACTION
r_bond_other_d
0.002
0.02
1336
X-RAY DIFFRACTION
r_angle_refined_deg
1.439
1.945
2056
X-RAY DIFFRACTION
r_angle_other_deg
0.788
3
3106
X-RAY DIFFRACTION
r_dihedral_angle_1_deg
6.233
5
198
X-RAY DIFFRACTION
r_dihedral_angle_2_deg
35.774
24.568
81
X-RAY DIFFRACTION
r_dihedral_angle_3_deg
11.47
15
255
X-RAY DIFFRACTION
r_dihedral_angle_4_deg
8.368
15
9
X-RAY DIFFRACTION
r_chiral_restr
0.082
0.2
217
X-RAY DIFFRACTION
r_gen_planes_refined
0.006
0.02
1722
X-RAY DIFFRACTION
r_gen_planes_other
0.001
0.02
316
X-RAY DIFFRACTION
r_nbd_refined
0.227
0.2
298
X-RAY DIFFRACTION
r_nbd_other
0.192
0.2
1413
X-RAY DIFFRACTION
r_nbtor_refined
0.189
0.2
740
X-RAY DIFFRACTION
r_nbtor_other
0.085
0.2
853
X-RAY DIFFRACTION
r_xyhbond_nbd_refined
0.159
0.2
132
X-RAY DIFFRACTION
r_symmetry_vdw_refined
0.239
0.2
12
X-RAY DIFFRACTION
r_symmetry_vdw_other
0.238
0.2
47
X-RAY DIFFRACTION
r_symmetry_hbond_refined
0.184
0.2
16
X-RAY DIFFRACTION
r_mcbond_it
1.892
3
941
X-RAY DIFFRACTION
r_mcbond_other
0.387
3
373
X-RAY DIFFRACTION
r_mcangle_it
2.69
5
1437
X-RAY DIFFRACTION
r_scbond_it
4.058
8
674
X-RAY DIFFRACTION
r_scangle_it
5.479
11
606
LS精密化 シェル
解像度: 1.28→1.313 Å / Total num. of bins used: 20
Rfactor
反射数
%反射
Rfree
0.317
36
-
Rwork
0.293
924
-
obs
-
960
27.68 %
精密化 TLS
手法: refined / Origin x: 18.079 Å / Origin y: 26.729 Å / Origin z: 12.492 Å