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- PDB-2n0q: N2-dG-IQ modified DNA at the G1 position of the NarI recognition ... -
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Open data
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Basic information
Entry | Database: PDB / ID: 2n0q | ||||||
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Title | N2-dG-IQ modified DNA at the G1 position of the NarI recognition sequence | ||||||
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Function / homology | ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
Model details | closest to the average, model1 | ||||||
![]() | Stavros, K. / Hawkins, E. / Rizzo, C. / Stone, M. | ||||||
![]() | ![]() Title: Base-Displaced Intercalated Conformation of the 2-Amino-3-methylimidazo[4,5-f]quinoline N(2)-dG DNA Adduct Positioned at the Nonreiterated G(1) in the NarI Restriction Site. Authors: Stavros, K.M. / Hawkins, E.K. / Rizzo, C.J. / Stone, M.P. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 164.2 KB | Display | ![]() |
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PDB format | ![]() | 131.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: DNA chain | Mass: 3795.551 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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#2: DNA chain | Mass: 3728.429 Da / Num. of mol.: 1 / Source method: obtained synthetically |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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NMR experiment | Type![]() ![]() |
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Sample preparation
Details | Contents: 430 uM IQ, 430 mM DNA (5'-D(*CP*TP*CP*(IQG)P*GP*CP*GP*CP*CP*AP*TP*C)-3'), 430 mM DNA (5'-D(*GP*AP*TP*GP*GP*CP*GP*CP*CP*GP*AP*G)-3'), 100% D2O Solvent system: 100% D2O | ||||||||||||
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Sample |
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Sample conditions | Ionic strength: 0.1 / pH: 7 / Pressure: ambient / Temperature: 288 K |
-NMR measurement
NMR spectrometer | Type: Bruker Avance / Manufacturer: Bruker / Model![]() |
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Processing
NMR software |
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Refinement | Method: ![]() | ||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 10 / Conformers submitted total number: 10 |