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Yorodumi- PDB-2lra: NMR Structure of Signal Sequence Deleted (SSD) Rv0603 Protein fro... -
+Open data
-Basic information
Entry | Database: PDB / ID: 2lra | ||||||
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Title | NMR Structure of Signal Sequence Deleted (SSD) Rv0603 Protein from Mycobacterium tuberculosis without N-terminal His-tag | ||||||
Components | POSSIBLE EXPORTED PROTEIN | ||||||
Keywords | IMMUNE SYSTEM / SSD | ||||||
Function / homology | SHC Adaptor Protein - #20 / SHC Adaptor Protein / 2-Layer Sandwich / Alpha Beta / Possible exported protein Function and homology information | ||||||
Biological species | Mycobacterium tuberculosis (bacteria) | ||||||
Method | SOLUTION NMR / water refinement | ||||||
Model details | lowest energy, model 1 | ||||||
Authors | Tripathi, S. / Pulavarti, S. / Yadav, R. / Jain, A. / Pathak, P. / Meher, A. / Arora, A. | ||||||
Citation | Journal: To be Published Title: NMR Structure of Signal Sequence Deleted (SSD) Rv0603 Protein from Mycobacterium tuberculosis without N-terminal His-tag Authors: Tripathi, S. / Pulavarti, S. / Yadav, R. / Jain, A. / Pathak, P. / Meher, A. / Arora, A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 2lra.cif.gz | 251.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb2lra.ent.gz | 212.3 KB | Display | PDB format |
PDBx/mmJSON format | 2lra.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/lr/2lra ftp://data.pdbj.org/pub/pdb/validation_reports/lr/2lra | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 8235.750 Da / Num. of mol.: 1 / Fragment: UNP RESIDUES 28-103 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Mycobacterium tuberculosis (bacteria) / Gene: Rv0603 / Production host: Escherichia coli (E. coli) / Strain (production host): K12 / Variant (production host): BL21(DE3) / References: UniProt: O07775 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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NMR experiment |
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-Sample preparation
Details |
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Sample |
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Sample conditions | Ionic strength: 50 / pH: 6.5 / Pressure: ambient / Temperature: 298 K |
-NMR measurement
NMR spectrometer | Type: Varian INOVA / Manufacturer: Varian / Model: INOVA / Field strength: 600 MHz |
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-Processing
NMR software |
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Refinement | Method: water refinement / Software ordinal: 1 | ||||||||||||||||
NMR constraints | NOE constraints total: 1235 / NOE intraresidue total count: 319 / NOE long range total count: 391 / NOE medium range total count: 190 / NOE sequential total count: 335 / Protein chi angle constraints total count: 4 / Protein phi angle constraints total count: 63 / Protein psi angle constraints total count: 61 | ||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 10 / Representative conformer: 1 |