+
Open data
-
Basic information
Entry | Database: PDB / ID: 271d | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | STRUCTURAL STUDIES ON NUCLEIC ACIDS | ||||||||||||||||||
![]() | DNA (5'-D(*![]() ![]() ![]() ![]() Function / homology | ![]() ![]() Method | ![]() ![]() ![]() Partridge, B.L. / Salisbury, S.A. | ![]() #1: ![]() Title: Structural Studies on Nucleic Acids Authors: Partridge, B.L. History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 29.5 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 17.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
---|
-Related structure data
Related structure data | |
---|---|
Similar structure data |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
|
-
Components
#1: DNA chain | Mass: 3635.340 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Chemical | ChemComp-MG / | #3: Water | ChemComp-HOH / | ![]() |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.27 Å3/Da / Density % sol: 45.75 % | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal grow![]() | pH: 7.1 / Details: pH 7.10 | ||||||||||||
Components of the solutions |
|
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() |
Detector | Type: RIGAKU RAXIS IIC / Detector: IMAGE PLATE / Date: Mar 29, 1995 |
Radiation | Monochromator: GRAPHITE / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Resolution: 2.02→39.8 Å / Num. obs: 13706 / Rmerge(I) obs: 0.0704 |
-
Processing
Software |
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Method to determine structure![]() ![]() Details: STANDARD R-FACTOR = 17.6% ERROR R-FACTOR = 3.8% WEIGHTED R-FACTOR = 17.3% NUMBER OF REFLECTIONS INCLUDED = 13706 AVERAGE |FO-FC| DISCREPANCY = 26.29 AVERAGE WEIGHTED |FO-FC| DISCREPANCY = -0. ...Details: STANDARD R-FACTOR = 17.6% ERROR R-FACTOR = 3.8% WEIGHTED R-FACTOR = 17.3% NUMBER OF REFLECTIONS INCLUDED = 13706 AVERAGE |FO-FC| DISCREPANCY = 26.29 AVERAGE WEIGHTED |FO-FC| DISCREPANCY = -0.03 CORRELATION COEFFICIENT = 100.4% RESOLUTION BREAKDOWN "ALL" R FACTOR = 18.4%
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.02 Å
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints |
|