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Open data
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Basic information
Entry | Database: PDB / ID: 1w94 | ||||||
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Title | Crystal Structure of Mil (Mth680), an archaeal Imp4-like protein | ||||||
![]() | PROBABLE BRIX-DOMAIN RIBOSOMAL BIOGENESIS PROTEIN | ||||||
![]() | ARCHAEAL IMP4-BRIX DOMAIN / ![]() ![]() ![]() | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Ng, C.L. / Antson, A.A. / Ortiz-Lombardia, M. | ||||||
![]() | ![]() Title: Crystal Structure of Mil (Mth680): Internal Duplication and Similarity between the Imp4/Brix Domain and the Anticodon-Binding Domain of Class Iia Aminoacyl-tRNA Synthetases Authors: Ng, C.L. / Waterman, D. / Koonin, E.V. / Antson, A.A. / Ortiz-Lombardia, M. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 71.2 KB | Display | ![]() |
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PDB format | ![]() | 57.7 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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2 | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 18091.615 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() Strain: DELTA H / Production host: ![]() ![]() ![]() #2: Water | ChemComp-HOH / | ![]() Compound details | BRIX DOMAIN INVOLVED IN RIBOSOME BIOGENESIS | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2 Å3/Da / Density % sol: 38 % |
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Crystal grow![]() | pH: 7.5 Details: THE PROTEIN AT APPROX. 10 MG/ML WAS CRYSTALLIZED IN 20% PEG3350 AND 0.1 M HEPES 7.5, pH 7.50 |
-Data collection
Diffraction | Mean temperature: 100 K | ||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | ||||||||||||
Detector | Type: MARRESEARCH / Detector: CCD / Date: Jun 26, 2004 | ||||||||||||
Radiation | Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | ||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2→47.46 Å / Num. obs: 20938 / % possible obs: 100 % / Observed criterion σ(I): 0 / Redundancy: 3.9 % / Rmerge(I) obs: 0.11 / Net I/σ(I): 9.23 | ||||||||||||
Reflection shell | Resolution: 2→2.02 Å / Redundancy: 3.87 % / Rmerge(I) obs: 0.57 / Mean I/σ(I) obs: 1.47 / % possible all: 100 |
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Processing
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Refinement | Method to determine structure![]() ![]()
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Solvent computation | Ion probe radii: 0.8 Å / Shrinkage radii: 0.8 Å / VDW probe radii: 1.2 Å / Solvent model: BABINET MODEL WITH MASK | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 31.43 Å2
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Refinement step | Cycle: LAST / Resolution: 2→60.08 Å
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Refine LS restraints |
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