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Yorodumi- PDB-1vl6: Crystal structure of NAD-dependent malic enzyme (TM0542) from The... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1vl6 | ||||||
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Title | Crystal structure of NAD-dependent malic enzyme (TM0542) from Thermotoga maritima at 2.61 A resolution | ||||||
Components | malate oxidoreductase | ||||||
Keywords | OXIDOREDUCTASE / TM0542 / NAD-DEPENDENT MALIC ENZYME / STRUCTURAL GENOMICS / JCSG / PROTEIN STRUCTURE INITIATIVE / PSI / Joint Center for Structural Genomics | ||||||
Function / homology | Function and homology information malic enzyme activity / oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor / NAD binding / metal ion binding Similarity search - Function | ||||||
Biological species | Thermotoga maritima (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / MAD / Resolution: 2.61 Å | ||||||
Authors | Joint Center for Structural Genomics (JCSG) | ||||||
Citation | Journal: To be published Title: Crystal structure of NAD-dependent malic enzyme (TM0542) from Thermotoga maritima at 2.61 A resolution Authors: Joint Center for Structural Genomics (JCSG) | ||||||
History |
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Remark 999 | SEQUENCE FOR THE VAL/MET CONFLICT AT RESIDUE 1: THIS GENE PRODUCT WAS EXPRESSED AS A FUSION ... SEQUENCE FOR THE VAL/MET CONFLICT AT RESIDUE 1: THIS GENE PRODUCT WAS EXPRESSED AS A FUSION PROTEIN, SO THE ORIGINAL INITIATION CODON WAS TRANSLATED AS VAL INSTEAD OF MET. THERE IS A POINT MUTATION, ILE TO VAL, AT POSITION 6. IT WAS AN ERROR INTRODUCED DURING CLONING. THIS IS SUPPORTED BY THE ELECTRON DENSITY WHICH CLEARLY SHOW VAL RESIDUES AT THE POSITION 6 OF ALL FOUR CHAINS. |
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1vl6.cif.gz | 280.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1vl6.ent.gz | 230.8 KB | Display | PDB format |
PDBx/mmJSON format | 1vl6.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/vl/1vl6 ftp://data.pdbj.org/pub/pdb/validation_reports/vl/1vl6 | HTTPS FTP |
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-Related structure data
Similar structure data | |
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Other databases |
-Links
-Assembly
Deposited unit |
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Unit cell |
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Noncrystallographic symmetry (NCS) | NCS domain:
NCS domain segments: Component-ID: 1 / Refine code: 3
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