+データを開く
-基本情報
登録情報 | データベース: PDB / ID: 1rei | ||||||
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タイトル | THE MOLECULAR STRUCTURE OF A DIMER COMPOSED OF THE VARIABLE PORTIONS OF THE BENCE-JONES PROTEIN REI REFINED AT 2.0 ANGSTROMS RESOLUTION | ||||||
要素 | BENCE-JONES PROTEIN REI (LIGHT CHAIN)ベンス・ジョーンズ蛋白 | ||||||
キーワード | IMMUNOGLOBULIN(PART)SEQUESTERS ANTIGENS | ||||||
機能・相同性 | 機能・相同性情報 CD22 mediated BCR regulation / Fc epsilon receptor (FCERI) signaling / immunoglobulin complex / Classical antibody-mediated complement activation / Initial triggering of complement / FCGR activation / Role of phospholipids in phagocytosis / Role of LAT2/NTAL/LAB on calcium mobilization / Scavenging of heme from plasma / FCERI mediated Ca+2 mobilization ...CD22 mediated BCR regulation / Fc epsilon receptor (FCERI) signaling / immunoglobulin complex / Classical antibody-mediated complement activation / Initial triggering of complement / FCGR activation / Role of phospholipids in phagocytosis / Role of LAT2/NTAL/LAB on calcium mobilization / Scavenging of heme from plasma / FCERI mediated Ca+2 mobilization / FCGR3A-mediated IL10 synthesis / Antigen activates B Cell Receptor (BCR) leading to generation of second messengers / antigen binding / Regulation of Complement cascade / Cell surface interactions at the vascular wall / FCERI mediated MAPK activation / FCGR3A-mediated phagocytosis / Regulation of actin dynamics for phagocytic cup formation / FCERI mediated NF-kB activation / Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell / 獲得免疫系 / Potential therapeutics for SARS / blood microparticle / 免疫応答 / extracellular space / extracellular exosome / extracellular region / 細胞膜 類似検索 - 分子機能 | ||||||
生物種 | Homo sapiens (ヒト) | ||||||
手法 | X線回折 / 解像度: 2 Å | ||||||
データ登録者 | Epp, O. / Lattman, E.E. / Colman, P. / Fehlhammer, H. / Bode, W. / Schiffer, M. / Huber, R. / Palm, W. | ||||||
引用 | ジャーナル: Biochemistry / 年: 1975 タイトル: The molecular structure of a dimer composed of the variable portions of the Bence-Jones protein REI refined at 2.0-A resolution. 著者: Epp, O. / Lattman, E.E. / Schiffer, M. / Huber, R. / Palm, W. #1: ジャーナル: Eur.J.Biochem. / 年: 1974 タイトル: Crystal and Molecular Structure of a Dimer Composed of the Variable Portions of the Bence-Jones Protein Rei 著者: Epp, O. / Colman, P. / Fehlhammer, H. / Bode, W. / Schiffer, M. / Huber, R. / Palm, W. | ||||||
履歴 |
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-構造の表示
構造ビューア | 分子: MolmilJmol/JSmol |
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-ダウンロードとリンク
-ダウンロード
PDBx/mmCIF形式 | 1rei.cif.gz | 45 KB | 表示 | PDBx/mmCIF形式 |
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PDB形式 | pdb1rei.ent.gz | 35.4 KB | 表示 | PDB形式 |
PDBx/mmJSON形式 | 1rei.json.gz | ツリー表示 | PDBx/mmJSON形式 | |
その他 | その他のダウンロード |
-検証レポート
アーカイブディレクトリ | https://data.pdbj.org/pub/pdb/validation_reports/re/1rei ftp://data.pdbj.org/pub/pdb/validation_reports/re/1rei | HTTPS FTP |
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-関連構造データ
-リンク
-集合体
登録構造単位 |
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1 |
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単位格子 |
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Atom site foot note | 1: PROLINE A 8 HAS A CIS PEPTIDE BOND / 2: PROLINE A 95 HAS A CIS PEPTIDE BOND / 3: PROLINE B 8 HAS A CIS PEPTIDE BOND / 4: PROLINE B 95 HAS A CIS PEPTIDE BOND | ||||||||
非結晶学的対称性 (NCS) | NCS oper: (Code: given Matrix: (-0.91, -0.41511, 0.007), ベクター: |
-要素
#1: 抗体 | 分子量: 11751.988 Da / 分子数: 2 / 由来タイプ: 組換発現 / 由来: (組換発現) Homo sapiens (ヒト) / 参照: UniProt: P01607, UniProt: P01593*PLUS #2: 水 | ChemComp-HOH / | |
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-実験情報
-実験
実験 | 手法: X線回折 |
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-試料調製
結晶 | マシュー密度: 3.46 Å3/Da / 溶媒含有率: 64.48 % |
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結晶化 | *PLUS 手法: unknown |
-データ収集
放射 | 散乱光タイプ: x-ray |
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放射波長 | 相対比: 1 |
反射 | *PLUS Num. obs: 14993 / Num. measured all: 42464 |
-解析
精密化 | 最高解像度: 2 Å 詳細: THE LOCAL DIAD IS NORMAL TO THE 6(1) AXIS AND INTERSECTS IT 17.05 ANGSTROMS FROM THE Z=0 PLANE IN THE +Z DIRECTION. WHEN PROJECTED ONTO THE Z=0 PLANE THE DIAD MAKES AN ANGLE OF 102.5 DEGREES ...詳細: THE LOCAL DIAD IS NORMAL TO THE 6(1) AXIS AND INTERSECTS IT 17.05 ANGSTROMS FROM THE Z=0 PLANE IN THE +Z DIRECTION. WHEN PROJECTED ONTO THE Z=0 PLANE THE DIAD MAKES AN ANGLE OF 102.5 DEGREES WITH THE +X AXIS AND 17.5 DEGREES WITH THE +Y AXIS. | ||||||||||||
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精密化ステップ | サイクル: LAST / 最高解像度: 2 Å
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精密化 | *PLUS Rfactor obs: 0.241 | ||||||||||||
溶媒の処理 | *PLUS | ||||||||||||
原子変位パラメータ | *PLUS |