+Open data
-Basic information
Entry | Database: PDB / ID: 1new | ||||||||||||
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Title | Cytochrome C551.5, NMR | ||||||||||||
Components | CYTOCHROME C551.5 | ||||||||||||
Keywords | ELECTRON TRANSPORT / CYTOCHROME / MULTIHEME CYTOCHROME / CYTOCHROME C7 | ||||||||||||
Function / homology | Function and homology information anaerobic respiration / electron transfer activity / heme binding / metal ion binding Similarity search - Function | ||||||||||||
Biological species | Desulfuromonas acetoxidans (bacteria) | ||||||||||||
Method | SOLUTION NMR / TORSION ANGLE MOLECULAR DYNAMICS | ||||||||||||
Authors | Assfalg, M. / Banci, L. / Bertini, I. / Bruschi, M. / Turano, P. | ||||||||||||
Citation | Journal: Eur.J.Biochem. / Year: 1998 Title: 800 MHz 1H NMR solution structure refinement of oxidized cytochrome c7 from Desulfuromonas acetoxidans. Authors: Assfalg, M. / Banci, L. / Bertini, I. / Bruschi, M. / Turano, P. #1: Journal: Proc.Natl.Acad.Sci.USA / Year: 1996 Title: NMR Characterization and Solution Structure Determination of the Oxidized Cytochrome C7 from Desulfuromonas Acetoxidans Authors: Banci, L. / Bertini, I. / Bruschi, M. / Sompornpisut, P. / Turano, P. #2: Journal: J.Biol.Inorg.Chem. / Year: 1996 Title: Structure of the Three-Haem Core of Cytochrome C551.5 Determined by 1H NMR Authors: Coutinho, I.B. / Turner, D.L. / Liu, M.Y. / Legall, J. / Xavier, A.V. #3: Journal: Eur.J.Biochem. / Year: 1984 Title: Nuclear-Magnetic-Resonance Studies of Desulfuromonas Acetoxidans Cytochrome C551.5 (C7) Authors: Moura, J.G. / Moore, G.R. / Williams, R.J. / Probst, I. / Legall, J. / Xavier, A.V. #4: Journal: FEBS Lett. / Year: 1971 Title: The Amino Acid Resequence of Cytochrome C-551.5 (Cytochrome C7) from the Green Photosynthetic Bacterium Chloropseudomonas Ethylica Authors: Ambler, R.P. | ||||||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1new.cif.gz | 825.1 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1new.ent.gz | 718.7 KB | Display | PDB format |
PDBx/mmJSON format | 1new.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ne/1new ftp://data.pdbj.org/pub/pdb/validation_reports/ne/1new | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein | Mass: 7280.309 Da / Num. of mol.: 1 / Source method: isolated from a natural source Details: CLASS III OF C-TYPE CYTOCHROMES, FULLY OXIDIZED FORM Source: (natural) Desulfuromonas acetoxidans (bacteria) / References: UniProt: P00137 |
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#2: Chemical |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR experiment | Type: NOESY |
-Sample preparation
Sample conditions | pH: 6.5 / Temperature: 298 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer | Type: Bruker DMX800 / Manufacturer: Bruker / Model: DMX800 / Field strength: 800 MHz |
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-Processing
Software |
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NMR software |
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Refinement | Method: TORSION ANGLE MOLECULAR DYNAMICS / Software ordinal: 1 / Details: ENERGY MINIMIZATION BY THE SANDER MODULE OF AMBER | |||||||||
NMR ensemble | Conformer selection criteria: MINIMUM TARGET FUNCTION VALUE / Conformers calculated total number: 1000 / Conformers submitted total number: 35 |