+Open data
-Basic information
Entry | Database: PDB / ID: 1mr0 | |||||||||
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Title | SOLUTION NMR STRUCTURE OF AGRP(87-120; C105A) | |||||||||
Components | AGOUTI RELATED PROTEIN | |||||||||
Keywords | SIGNALING PROTEIN / RATIONAL PROTEIN DESIGN / ICK / INHIBITOR CYSTINE KNOT / AGRP / AGOUTI-RELATED PROTEIN / MELANOCORTIN | |||||||||
Function / homology | Function and homology information long-day photoperiodism / type 1 melanocortin receptor binding / positive regulation of feeding behavior / adult feeding behavior / regulation of feeding behavior / neuropeptide hormone activity / feeding behavior / eating behavior / neuropeptide signaling pathway / maternal process involved in female pregnancy ...long-day photoperiodism / type 1 melanocortin receptor binding / positive regulation of feeding behavior / adult feeding behavior / regulation of feeding behavior / neuropeptide hormone activity / feeding behavior / eating behavior / neuropeptide signaling pathway / maternal process involved in female pregnancy / FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes / hormone-mediated signaling pathway / response to insulin / Golgi lumen / circadian rhythm / signaling receptor binding / neuronal cell body / extracellular space Similarity search - Function | |||||||||
Method | SOLUTION NMR / torsion angle dynamics | |||||||||
Authors | Jackson, P.J. / Mcnulty, J.C. / Yang, Y.K. / Thompson, D.A. / Chai, B. / Gantz, I. / Barsh, G.S. / Millhauser, G.M. | |||||||||
Citation | Journal: Biochemistry / Year: 2002 Title: Design, pharmacology, and NMR structure of a minimized cystine knot with agouti-related protein activity. Authors: Jackson, P.J. / McNulty, J.C. / Yang, Y.K. / Thompson, D.A. / Chai, B. / Gantz, I. / Barsh, G.S. / Millhauser, G.L. #1: Journal: Biochemistry / Year: 2001 Title: High Resolution NMR Structure of the Chemically-Synthesized Melanocortin Receptor Binding Domain of Agrp(87-132) of the Agouti-Related Protein. Authors: Mcnulty, J.C. / Thompson, D.A. / Bolin, K.A. / Wilken, J. / Barsh, G.S. / Millhauser, G.M. | |||||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1mr0.cif.gz | 391.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1mr0.ent.gz | 340.3 KB | Display | PDB format |
PDBx/mmJSON format | 1mr0.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/mr/1mr0 ftp://data.pdbj.org/pub/pdb/validation_reports/mr/1mr0 | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3912.590 Da / Num. of mol.: 1 / Fragment: RESIDUES 87-120 / Mutation: C105A / Source method: obtained synthetically Details: THE PROTEIN WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THE PROTEIN IS NATURALLY FOUND IN HOMO SAPIENS. THE SYNTHETIC METHOD IS STANDARD SOLID-PHASE SYNTHESIS FOLLOWED BY AQUEOUS OXIDATIVE FOLDING. References: UniProt: O00253 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||
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NMR experiment |
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NMR details | Text: THE NOESY, TOCSY AND DQF-COSY EXPERIMENTS WERE PERFORMED AT 800 MHZ; THE HX STUDY WAS CONDUCTED AT 500 MHZ. |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M | |||||||||||||||
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Radiation wavelength | Relative weight: 1 | |||||||||||||||
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 Details: STRUCTURE CALCULATIONS WERE ASSISTED WITH AUTOMATED ASSIGNMENT. FINAL STRUCTURES WERE CALCULATED USING 602 NOE-BASED UPPER LIMIT RESTRAINTS AND 23 ALPHA-TO- AMIDE 3-BOND J-COUPLING CONSTANTS. | ||||||||||||||||||||||||
NMR representative | Selection criteria: lowest target function | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: target function / Conformers calculated total number: 1000 / Conformers submitted total number: 40 |