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Yorodumi- PDB-1kr8: Refinement of d(GCGAAGC) Hairpin Structure Using One-and Two-Bond... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1kr8 | ||||||||||||||||||
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Title | Refinement of d(GCGAAGC) Hairpin Structure Using One-and Two-Bonds Residual Dipolar Couplings | ||||||||||||||||||
Components | 5'-D(*Keywords | DNA / hairpin / GA mismatch | Function / homology | DNA | Function and homology information Method | SOLUTION NMR / molecular dynamics | Authors | Padrta, P. / Stefl, R. / Zidek, L. / Sklenar, V. | Citation | Journal: J.BIOMOL.NMR / Year: 2002 | Title: Refinement of d(GCGAAGC) Hairpin Structure Using One- and Two-Bond Residual Dipolar Couplings Authors: Padrta, P. / Stefl, R. / Kralik, L. / Zidek, L. / Sklenar, V. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1kr8.cif.gz | 58.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1kr8.ent.gz | 39.1 KB | Display | PDB format |
PDBx/mmJSON format | 1kr8.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/kr/1kr8 ftp://data.pdbj.org/pub/pdb/validation_reports/kr/1kr8 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 2147.437 Da / Num. of mol.: 1 / Source method: obtained synthetically Details: This sequence occurs naturally in replication origins of phage phiX174, in herpes simplex virus, in E. coli heat-shock gene and rRNA genes. |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: The structure was determined using triple-resonance NMR spectroscopy in isotropic and liquid crystalline phase. |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M |
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Radiation wavelength | Relative weight: 1 |
NMR spectrometer | Type: Bruker AVANCE / Manufacturer: Bruker / Model: AVANCE / Field strength: 500 MHz |
-Processing
NMR software |
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Refinement | Method: molecular dynamics / Software ordinal: 1 | ||||||||||||||||||||||||
NMR representative | Selection criteria: closest to the average | ||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: all calculated structures submitted Conformers calculated total number: 14 / Conformers submitted total number: 14 |