- PDB-1jsp: NMR Structure of CBP Bromodomain in complex with p53 peptide -
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Basic information
Entry
Database: PDB / ID: 1jsp
Title
NMR Structure of CBP Bromodomain in complex with p53 peptide
Components
CREB-BINDING PROTEIN
tumor protein p53Neoplasm
Keywords
DNA BINDING PROTEIN / Bromodomain / CBP / NMR structure.
Function / homology
Function and homology information
NFE2L2 regulating ER-stress associated genes / peptide N-acetyltransferase activity / Activation of the TFAP2 (AP-2) family of transcription factors / NFE2L2 regulating inflammation associated genes / regulation of smoothened signaling pathway / histone H3K18 acetyltransferase activity / LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production / N-terminal peptidyl-lysine acetylation / histone H3K27 acetyltransferase activity / NFE2L2 regulates pentose phosphate pathway genes ...NFE2L2 regulating ER-stress associated genes / peptide N-acetyltransferase activity / Activation of the TFAP2 (AP-2) family of transcription factors / NFE2L2 regulating inflammation associated genes / regulation of smoothened signaling pathway / histone H3K18 acetyltransferase activity / LRR FLII-interacting protein 1 (LRRFIP1) activates type I IFN production / N-terminal peptidyl-lysine acetylation / histone H3K27 acetyltransferase activity / NFE2L2 regulates pentose phosphate pathway genes / NFE2L2 regulating MDR associated enzymes / MRF binding / Loss of function of TP53 in cancer due to loss of tetramerization ability / Regulation of TP53 Expression / signal transduction by p53 class mediator / negative regulation of G1 to G0 transition / negative regulation of glucose catabolic process to lactate via pyruvate / RUNX1 regulates transcription of genes involved in differentiation of myeloid cells / Transcriptional activation of cell cycle inhibitor p21 / regulation of intrinsic apoptotic signaling pathway by p53 class mediator / Activation of NOXA and translocation to mitochondria / negative regulation of pentose-phosphate shunt / ATP-dependent DNA/DNA annealing activity / negative regulation of helicase activity / regulation of cell cycle G2/M phase transition / intrinsic apoptotic signaling pathway in response to hypoxia / regulation of fibroblast apoptotic process / oxidative stress-induced premature senescence / oligodendrocyte apoptotic process / negative regulation of miRNA processing / positive regulation of thymocyte apoptotic process / glucose catabolic process to lactate via pyruvate / regulation of tissue remodeling / positive regulation of mitochondrial membrane permeability / negative regulation of mitophagy / positive regulation of programmed necrotic cell death / Regulation of gene expression in late stage (branching morphogenesis) pancreatic bud precursor cells / RUNX3 regulates NOTCH signaling / mRNA transcription / bone marrow development / circadian behavior / T cell proliferation involved in immune response / NOTCH4 Intracellular Domain Regulates Transcription / Regulation of FOXO transcriptional activity by acetylation / regulation of mitochondrial membrane permeability involved in apoptotic process / histone deacetylase regulator activity / RUNX3 regulates CDKN1A transcription / germ cell nucleus / Regulation of gene expression by Hypoxia-inducible Factor / Nuclear events mediated by NFE2L2 / regulation of DNA damage response, signal transduction by p53 class mediator / TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain / Regulation of NFE2L2 gene expression / TP53 Regulates Transcription of Death Receptors and Ligands / negative regulation of transcription by RNA polymerase I / Activation of PUMA and translocation to mitochondria / NOTCH3 Intracellular Domain Regulates Transcription / DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator / negative regulation of neuroblast proliferation / NFE2L2 regulating anti-oxidant/detoxification enzymes / negative regulation of glial cell proliferation / Formation of Senescence-Associated Heterochromatin Foci (SAHF) / TRAF6 mediated IRF7 activation / peptide-lysine-N-acetyltransferase activity / FOXO-mediated transcription of cell death genes / NFE2L2 regulating tumorigenic genes / Regulation of TP53 Activity through Association with Co-factors / positive regulation of execution phase of apoptosis / embryonic digit morphogenesis / mitochondrial DNA repair / T cell lineage commitment / homeostatic process / negative regulation of DNA replication / ER overload response / B cell lineage commitment / Notch-HLH transcription pathway / thymocyte apoptotic process / positive regulation of cardiac muscle cell apoptotic process / TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain / protein acetylation / TP53 Regulates Transcription of Caspase Activators and Caspases / Formation of paraxial mesoderm / entrainment of circadian clock by photoperiod / cardiac septum morphogenesis / positive regulation of transforming growth factor beta receptor signaling pathway / PI5P Regulates TP53 Acetylation / Association of TriC/CCT with target proteins during biosynthesis / non-canonical NF-kappaB signal transduction / Zygotic genome activation (ZGA) / necroptotic process / stimulatory C-type lectin receptor signaling pathway / acetyltransferase activity / rRNA transcription / cellular response to nutrient levels / positive regulation of release of cytochrome c from mitochondria / TP53 Regulates Transcription of Genes Involved in Cytochrome C Release / TFIID-class transcription factor complex binding / mitophagy / negative regulation of telomere maintenance via telomerase / SUMOylation of transcription factors Similarity search - Function
Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M
Radiation wavelength
Relative weight: 1
NMR spectrometer
Type
Manufacturer
Model
Field strength (MHz)
Spectrometer-ID
Bruker DRX
Bruker
DRX
500
1
Bruker DRX
Bruker
DRX
600
2
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Processing
NMR software
Name
Version
Developer
Classification
NMRPipe
1
FrankDelaglio
processing
NMRView
5.0.3
BruceJohnson
dataanalysis
X-PLOR
3.1
AxelBrunger
structuresolution
ARIA
0.1
MichaelNilges
iterativematrixrelaxation
X-PLOR
3.1
AxelBrunger
refinement
Refinement
Method: distance geometry simulated annealing / Software ordinal: 1 Details: 71 inter-molecular NOEs are observed between protein and peptide.
NMR ensemble
Conformer selection criteria: structures with the least restraint violations,structures with the lowest energy Conformers calculated total number: 200 / Conformers submitted total number: 20
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