+Open data
-Basic information
Entry | Database: PDB / ID: 1h71 | ||||||
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Title | Psychrophilic Protease from Pseudoalteromonas 'TAC II 18' | ||||||
Components | SERRALYSIN | ||||||
Keywords | HYDROLASE / PSYCHROPHILIC / ADAPTATION TO COLD / PROTEASE / DIFFERENT CRYSTAL FORMS | ||||||
Function / homology | Function and homology information serralysin / extracellular matrix / metalloendopeptidase activity / calcium ion binding / proteolysis / extracellular space / zinc ion binding Similarity search - Function | ||||||
Biological species | PSEUDOMONAS SP. TAC II 18 (bacteria) | ||||||
Method | X-RAY DIFFRACTION / MOLECULAR REPLACEMENT / Resolution: 2.1 Å | ||||||
Authors | Villeret, V. / Van Petegem, F. / Aghajari, N. / Chessa, J.-P. / Gerday, C. / Haser, R. / Van Beeumen, J. | ||||||
Citation | Journal: Proteins: Struct.,Funct., Genet. / Year: 2003 Title: Crystal Structures of a Psychrophilic Metalloprotease Reveal New Insights Into Catalysis by Cold-Adapted Proteases Authors: Aghajari, N. / Van Petegem, F. / Villeret, V. / Chessa, J.-P. / Gerday, C. / Haser, R. / Van Beeumen, J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1h71.cif.gz | 108.2 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1h71.ent.gz | 80.1 KB | Display | PDB format |
PDBx/mmJSON format | 1h71.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/h7/1h71 ftp://data.pdbj.org/pub/pdb/validation_reports/h7/1h71 | HTTPS FTP |
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-Related structure data
Related structure data | 1g9kC 1kapS S: Starting model for refinement C: citing same article (ref.) |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 48724.543 Da / Num. of mol.: 1 / Fragment: RESIDUES 18-480 / Source method: isolated from a natural source / Source: (natural) PSEUDOMONAS SP. TAC II 18 (bacteria) / References: UniProt: O69771, serralysin | ||||
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#2: Chemical | ChemComp-CA / #3: Chemical | ChemComp-ZN / | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.58 Å3/Da / Density % sol: 53 % | |||||||||||||||||||||||||||||||||||
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Crystal grow | pH: 7 / Details: pH 7.00 | |||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 4 or 10 ℃ / Method: vapor diffusion, hanging drop / Details: Villeret, V., (1997) Protein Sci., 6, 2462. | |||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 294 K |
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Diffraction source | Source: ROTATING ANODE / Type: ENRAF-NONIUS FR591 / Wavelength: 1.5418 |
Detector | Type: MAC Science DIP-2030 / Detector: IMAGE PLATE / Details: DOUBLE MIRROR |
Radiation | Monochromator: NI FILTER / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.1→15 Å / Num. obs: 29234 / % possible obs: 96.7 % / Redundancy: 2.5 % / Rmerge(I) obs: 0.07 |
Reflection shell | Resolution: 2.1→2.17 Å / % possible all: 97.7 |
-Processing
Software |
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Refinement | Method to determine structure: MOLECULAR REPLACEMENT Starting model: PDB ENTRY 1KAP Resolution: 2.1→15 Å / Cross valid method: THROUGHOUT
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Refinement step | Cycle: LAST / Resolution: 2.1→15 Å
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Refinement | *PLUS Lowest resolution: 15 Å | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||
Refine LS restraints | *PLUS
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