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Yorodumi- PDB-1fzt: SOLUTION STRUCTURE AND DYNAMICS OF AN OPEN B-SHEET, GLYCOLYTIC EN... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1fzt | ||||||
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Title | SOLUTION STRUCTURE AND DYNAMICS OF AN OPEN B-SHEET, GLYCOLYTIC ENZYME-MONOMERIC 23.7 KDA PHOSPHOGLYCERATE MUTASE FROM SCHIZOSACCHAROMYCES POMBE | ||||||
Components | PHOSPHOGLYCERATE MUTASE | ||||||
Keywords | ISOMERASE / open B-sheet-helices | ||||||
Function / homology | Function and homology information Glycolysis / Gluconeogenesis / Neutrophil degranulation / phosphoglycerate mutase activity / 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity / phosphoglycerate mutase (2,3-diphosphoglycerate-dependent) / canonical glycolysis / gluconeogenesis / nucleus / cytosol Similarity search - Function | ||||||
Biological species | Schizosaccharomyces pombe (fission yeast) | ||||||
Method | SOLUTION NMR / simulated annealing, molecular dynamics | ||||||
Authors | Uhrinova, S. / Uhrin, D. / Nairn, J. / Price, N.C. / Fothergill-Gilmore, L.A. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 2001 Title: Solution structure and dynamics of an open beta-sheet, glycolytic enzyme, monomeric 23.7 kDa phosphoglycerate mutase from Schizosaccharomyces pombe. Authors: Uhrinova, S. / Uhrin, D. / Nairn, J. / Price, N.C. / Fothergill-Gilmore, L.A. / Barlow, P.N. #1: Journal: J.Biomol.NMR / Year: 1997 Title: Backbone Assignment of Double Labelled 23.7 kDa Phosphoglycerate Mutase from Scizosaccharomyces pombe Authors: Uhrinova, S. / Uhrin, D. / Nairn, J. / Price, N.C. / Fothergill-Gilmore, L.A. / BARLOW, P.N. #2: Journal: J.MAGN.RESON. / Year: 2000 Title: 3D HCCH3-TOCSY for Resonance Assignment of Methyl-containing Side Chains in (13)C-labeled Proteins Authors: Uhrin, D. / Uhrinova, S. / Leadbeater, C. / Nairn, J. / Price, N.C. / BARLOW, P.N. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1fzt.cif.gz | 1.3 MB | Display | PDBx/mmCIF format |
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PDB format | pdb1fzt.ent.gz | 1.1 MB | Display | PDB format |
PDBx/mmJSON format | 1fzt.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fz/1fzt ftp://data.pdbj.org/pub/pdb/validation_reports/fz/1fzt | HTTPS FTP |
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-Related structure data
Related structure data | |
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Similar structure data |
-Links
-Assembly
Deposited unit |
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NMR ensembles |
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-Components
#1: Protein | Mass: 23800.139 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Schizosaccharomyces pombe (fission yeast) Plasmid: PMA91 / Production host: Saccharomyces cerevisiae (brewer's yeast) / References: UniProt: P36623, EC: 5.4.2.1 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||
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NMR experiment |
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-Sample preparation
Details | Contents: 1mM phosphoglycerate mutase; 200mM sodium acetate, 200mM ammonium sulphate; 90% H2O, 10% D2O. Solvent system: 90% H2O/10% D2O |
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Sample conditions | pH: 6.4 / Pressure: ambient / Temperature: 310 K |
Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: simulated annealing, molecular dynamics / Software ordinal: 1 Details: structures are based om 3125 noe restraints, 74 hydrogen bonds, and 149 torsion angles | ||||||||||||||||||||
NMR representative | Selection criteria: lowest energy | ||||||||||||||||||||
NMR ensemble | Conformer selection criteria: structures with the lowest energy Conformers calculated total number: 55 / Conformers submitted total number: 21 |