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Yorodumi- PDB-1faa: CRYSTAL STRUCTURE OF THIOREDOXIN F FROM SPINACH CHLOROPLAST (LONG... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1faa | ||||||
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Title | CRYSTAL STRUCTURE OF THIOREDOXIN F FROM SPINACH CHLOROPLAST (LONG FORM) | ||||||
Components | THIOREDOXIN F | ||||||
Keywords | ELECTRON TRANSPORT | ||||||
Function / homology | Function and homology information | ||||||
Biological species | Spinacia oleracea (spinach) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.85 Å | ||||||
Authors | Capitani, G. / Markovic-Housley, Z. / DelVal, G. / Morris, M. / Jansonius, J.N. / Schurmann, P. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 2000 Title: Crystal structures of two functionally different thioredoxins in spinach chloroplasts. Authors: Capitani, G. / Markovic-Housley, Z. / DelVal, G. / Morris, M. / Jansonius, J.N. / Schurmann, P. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1faa.cif.gz | 31.9 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1faa.ent.gz | 23.8 KB | Display | PDB format |
PDBx/mmJSON format | 1faa.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fa/1faa ftp://data.pdbj.org/pub/pdb/validation_reports/fa/1faa | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Details | The biological assembly is a monomer |
-Components
#1: Protein | Mass: 13920.255 Da / Num. of mol.: 1 / Fragment: LONG FORM / Mutation: M1L, Q3L Source method: isolated from a genetically manipulated source Source: (gene. exp.) Spinacia oleracea (spinach) / Cellular location: CHLOROPLAST / Plasmid: PKK233-2 (MODIFIED) / Production host: Escherichia coli (E. coli) / References: UniProt: P09856 |
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#2: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.05 Å3/Da / Density % sol: 39.98 % |
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Crystal grow | Temperature: 293 K / Method: vapor diffusion, hanging drop / pH: 7 Details: sodium acetate, 2,5-hexane diol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K |
Crystal grow | *PLUS Details: Genovesio-Taverne, J.C., (1991) J. Mol. Biol., 222, 459. |
-Data collection
Diffraction | Mean temperature: 293 K |
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Diffraction source | Source: ROTATING ANODE / Type: ENRAF-NONIUS FR571 / Wavelength: 1.5418 |
Detector | Type: ENRAF-NONIUS FAST / Detector: DIFFRACTOMETER / Date: 1991 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 1.85→25.6 Å / Num. obs: 9180 / % possible obs: 95.2 % / Biso Wilson estimate: 25.6 Å2 / Rmerge(I) obs: 0.035 |
-Processing
Software |
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Refinement | Resolution: 1.85→25.6 Å / σ(F): 0 / Stereochemistry target values: Engh & Huber Details: Used overall anisotropic B-factor refinement and bulk solvent correction (X-PLOR 3.851)
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Refinement step | Cycle: LAST / Resolution: 1.85→25.6 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Version: 3.851 / Classification: refinement | ||||||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 25.6 Å / σ(F): 0 / % reflection Rfree: 3.1 % / Rfactor obs: 0.209 | ||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 34.2 Å2 | ||||||||||||||||||||||||
Refine LS restraints | *PLUS
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