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Yorodumi- PDB-1c34: SOLUTION STRUCTURE OF A QUADRUPLEX FORMING DNA AND ITS INTERMIDIATE -
+Open data
-Basic information
Entry | Database: PDB / ID: 1c34 | ||||||||||||||||||
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Title | SOLUTION STRUCTURE OF A QUADRUPLEX FORMING DNA AND ITS INTERMIDIATE | ||||||||||||||||||
Components | DNA (5'-D(*Keywords | DNA / APTAMER / THROMBIN BINDING / POTASSIUM / METAL BINDING SITES / QUADRUPLEX / INTERMEDIATE | Function / homology | DNA / DNA (> 10) | Function and homology information Method | SOLUTION NMR / STRUCTURE REFINEMENT OF THE DNA WAS PREFORMED USING COMPLETE RELAXATION MATRIX, RESTRAINED MOLECULAR DYNAMICS. | Authors | Bolton, P.H. / Marathias, V.M. / Wang, K. | Citation | Journal: Nucleic Acids Res. / Year: 2000 Title: Structures of the potassium-saturated, 2:1, and intermediate, 1:1, forms of a quadruplex DNA. Authors: Marathias, V.M. / Bolton, P.H. #1: Journal: J.Mol.Biol. / Year: 1996 Title: Determination of the Number and Location of the Manganese Binding Sites of DNA Quadruplexes in Solution by EPR and NMR in the Presence and Absence of Thrombin Authors: Bolton, P.H. / Marathias, V.M. / Wang, K. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1c34.cif.gz | 121.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1c34.ent.gz | 95.9 KB | Display | PDB format |
PDBx/mmJSON format | 1c34.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/c3/1c34 ftp://data.pdbj.org/pub/pdb/validation_reports/c3/1c34 | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 4743.051 Da / Num. of mol.: 1 / Source method: obtained synthetically / Details: THROMBIN BINDING APTAMER INTERMIDIATE |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR | ||||||||||||||||||||||||
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NMR experiment |
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NMR details | Text: THIS STRUCTURE IS THE INTERMEDIATE FORM OF THE 15MER QUADRUPLEX WITH ONLY 1 POTASSSIUM PER DNA MOLECULE. |
-Sample preparation
Details |
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Sample conditions |
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Crystal grow | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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-Processing
NMR software |
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Refinement | Method: STRUCTURE REFINEMENT OF THE DNA WAS PREFORMED USING COMPLETE RELAXATION MATRIX, RESTRAINED MOLECULAR DYNAMICS. Software ordinal: 1 | ||||||||||||||||||||||||||||
NMR ensemble | Conformer selection criteria: 80 TO 100PS STRUCTURES FROM DYNAMICS Conformers calculated total number: 11 / Conformers submitted total number: 11 |