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- EMDB-8190: m48S late-stage initiation complex, purified from rabbit reticulo... -

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Basic information

Entry
Database: EMDB / ID: EMD-8190
Titlem48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
Map dataNone
Sample
  • Complex: m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
    • RNA: x 3 types
    • Protein or peptide: x 39 types
Function / homology
Function and homology information


viral translational termination-reinitiation / eukaryotic translation initiation factor 3 complex / eukaryotic 43S preinitiation complex / protein-synthesizing GTPase / formation of cytoplasmic translation initiation complex / formation of translation preinitiation complex / eukaryotic 48S preinitiation complex / ribosomal subunit / Formation of the ternary complex, and subsequently, the 43S complex / Ribosomal scanning and start codon recognition ...viral translational termination-reinitiation / eukaryotic translation initiation factor 3 complex / eukaryotic 43S preinitiation complex / protein-synthesizing GTPase / formation of cytoplasmic translation initiation complex / formation of translation preinitiation complex / eukaryotic 48S preinitiation complex / ribosomal subunit / Formation of the ternary complex, and subsequently, the 43S complex / Ribosomal scanning and start codon recognition / Translation initiation complex formation / Formation of a pool of free 40S subunits / GTP hydrolysis and joining of the 60S ribosomal subunit / L13a-mediated translational silencing of Ceruloplasmin expression / regulation of translational fidelity / translational initiation / translation initiation factor activity / DNA-(apurinic or apyrimidinic site) lyase / small-subunit processome / ribosomal small subunit biogenesis / cytoplasmic stress granule / cytosolic small ribosomal subunit / tRNA binding / cell differentiation / structural constituent of ribosome / translation / mRNA binding / GTPase activity / synapse / GTP binding / nucleolus / perinuclear region of cytoplasm / RNA binding / cytosol / cytoplasm
Similarity search - Function
Translation initiation factor 2, beta subunit / Eukaryotic translation initiation factor 3 subunit G / Eukaryotic translation initiation factor 3 subunit G, N-terminal / eIF3G, RNA recognition motif / Eukaryotic translation initiation factor 3 subunit G / Eukaryotic translation initiation factor 3 subunit I / Translation initiation factor IF2/IF5 / Translation initiation factor IF2/IF5 domain / Translation initiation factor IF2/IF5, N-terminal / Translation initiation factor IF2/IF5, zinc-binding ...Translation initiation factor 2, beta subunit / Eukaryotic translation initiation factor 3 subunit G / Eukaryotic translation initiation factor 3 subunit G, N-terminal / eIF3G, RNA recognition motif / Eukaryotic translation initiation factor 3 subunit G / Eukaryotic translation initiation factor 3 subunit I / Translation initiation factor IF2/IF5 / Translation initiation factor IF2/IF5 domain / Translation initiation factor IF2/IF5, N-terminal / Translation initiation factor IF2/IF5, zinc-binding / Domain found in IF2B/IF5 / domain present in translation initiation factor eIF2B and eIF5 / IF2a, S1-like domain / Translation initiation factor 2, alpha subunit / Translation initiation factor 2, alpha subunit, middle domain superfamily / Translation initiation factor 2, alpha subunit, C-terminal / Eukaryotic translation initiation factor 2 alpha subunit / Initiation factor eIF2 gamma, domain 2 / Initiation factor eIF2 gamma, GTP-binding domain / Initiation factor eIF2 gamma, C-terminal / Initiation factor eIF2 gamma, C terminal / Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal / Ribosomal protein S26e signature. / S1 domain profile. / Ribosomal protein S21e signature. / Ribosomal protein S3Ae, conserved site / Ribosomal protein S12e signature. / 40S ribosomal protein S1/3, eukaryotes / Ribosomal protein S19e signature. / 40S Ribosomal protein S10 / Plectin/S10, N-terminal / Ribosomal protein S3Ae / Ribosomal S3Ae family / Plectin/S10 domain / Ribosomal protein S5/S7, eukaryotic/archaeal / Ribosomal S3Ae family / Ribosomal protein S17e signature. / Ribosomal protein S7e signature. / Ribosomal protein S3Ae signature. / Ribosomal protein S27e signature. / Ribosomal protein S4e signature. / Ribosomal protein S8e signature. / Translation elongation factor EFTu-like, domain 2 / Ribosomal S24e conserved site / Ribosomal protein S24e signature. / Ribosomal protein S24e / Ribosomal protein S24e / Ribosomal protein S6e signature. / Ribosomal protein S28e signature. / Elongation factor Tu domain 2 / Ribosomal protein S1-like RNA-binding domain / S1 RNA binding domain / S1 domain / Translational (tr)-type GTP-binding domain / Elongation factor Tu GTP binding domain / Translational (tr)-type guanine nucleotide-binding (G) domain profile. / RNA recognition motif / RNA recognition motif / Eukaryotic RNA Recognition Motif (RRM) profile. / RNA recognition motif domain / RNA-binding domain superfamily / Ribosomal protein S2 signature 2. / Ubiquitin domain signature. / Ribosomal protein L30 signature. / Ribosomal protein S3 signature. / Ribosomal protein S10 signature. / Ribosomal protein S14 signature. / Ribosomal protein S7, conserved site / Ribosomal protein S2 signature 1. / Type-2 KH domain profile. / Ribosomal protein S19 signature. / Ribosomal protein S7 signature. / Ribosomal protein S17 signature. / Ribosomal protein S13 signature. / Ribosomal protein S5/S7 / Ribosomal protein S7 domain / Ribosomal protein S7 domain superfamily / Ribosomal protein S13 family profile. / Ribosomal protein S8 signature. / Ribosomal protein S4 signature. / Ribosomal protein S15 signature. / Ribosomal protein S7p/S5e / S4 RNA-binding domain profile. / Ribosomal protein S11 signature. / Ubiquitin domain profile. / Ribosomal protein S9 signature. / Ribosomal protein S12 signature. / Ribosomal protein L23/L15e core domain superfamily / Translation protein, beta-barrel domain superfamily / WD40 repeat, conserved site / Nucleotide-binding alpha-beta plait domain superfamily / Trp-Asp (WD) repeats signature. / WD domain, G-beta repeat / WD40 repeats / WD40 repeat / Trp-Asp (WD) repeats profile. / Trp-Asp (WD) repeats circular profile. / WD40-repeat-containing domain superfamily / WD40/YVTN repeat-like-containing domain superfamily / Winged helix-like DNA-binding domain superfamily
Similarity search - Domain/homology
Small ribosomal subunit protein uS4 / Small ribosomal subunit protein eS12 / Small ribosomal subunit protein uS9 / Small ribosomal subunit protein uS10 / Small ribosomal subunit protein RACK1 / Ubiquitin-ribosomal protein eS31 fusion protein / Small ribosomal subunit protein uS15 / Protein-synthesizing GTPase / Small ribosomal subunit protein eS7 / Small ribosomal subunit protein uS12 ...Small ribosomal subunit protein uS4 / Small ribosomal subunit protein eS12 / Small ribosomal subunit protein uS9 / Small ribosomal subunit protein uS10 / Small ribosomal subunit protein RACK1 / Ubiquitin-ribosomal protein eS31 fusion protein / Small ribosomal subunit protein uS15 / Protein-synthesizing GTPase / Small ribosomal subunit protein eS7 / Small ribosomal subunit protein uS12 / Small ribosomal subunit protein eS10 / Small ribosomal subunit protein uS11 / Eukaryotic translation initiation factor 2 subunit 1 / Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein / Small ribosomal subunit protein eS25 / Small ribosomal subunit protein eS26 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein eS28 / Small ribosomal subunit protein eS8 / Small ribosomal subunit protein eS4 / Small ribosomal subunit protein eS6 / Small ribosomal subunit protein eS21 / Small ribosomal subunit protein eS19 / Small ribosomal subunit protein eS1 / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein uS13 / Plectin/eS10 N-terminal domain-containing protein / Small ribosomal subunit protein uS17 / 40S ribosomal protein S24 / Small ribosomal subunit protein eS17 / Large ribosomal subunit protein uL30 / Small ribosomal subunit protein uS2 / Small ribosomal subunit protein eS27 / Small ribosomal subunit protein uS19 / Small ribosomal subunit protein uS14 / Eukaryotic translation initiation factor 3 subunit G / Eukaryotic translation initiation factor 3 subunit I / Translation initiation factor 2 subunit beta / Ribosomal protein S5
Similarity search - Component
Biological speciesOryctolagus cuniculus (rabbit) / Homo sapiens (human)
Methodsingle particle reconstruction / cryo EM / Resolution: 5.8 Å
AuthorsSimonetti A / Brito Querido J / Myasnikov AG / Mancera-Martinez E / Renaud A / Kuhn L / Hashem Y
CitationJournal: Mol Cell / Year: 2016
Title: eIF3 Peripheral Subunits Rearrangement after mRNA Binding and Start-Codon Recognition.
Authors: Angelita Simonetti / Jailson Brito Querido / Alexander G Myasnikov / Eder Mancera-Martinez / Adeline Renaud / Lauriane Kuhn / Yaser Hashem /
Abstract: mRNA translation initiation in eukaryotes requires the cooperation of a dozen eukaryotic initiation factors (eIFs) forming several complexes, which leads to mRNA attachment to the small ribosomal ...mRNA translation initiation in eukaryotes requires the cooperation of a dozen eukaryotic initiation factors (eIFs) forming several complexes, which leads to mRNA attachment to the small ribosomal 40S subunit, mRNA scanning for start codon, and accommodation of initiator tRNA at the 40S P site. eIF3, composed of 13 subunits, 8 core (a, c, e, f, h, l, k, and m) and 5 peripheral (b, d, g, i, and j), plays a central role during this process. Here we report a cryo-electron microscopy structure of a mammalian 48S initiation complex at 5.8 Å resolution. It shows the relocation of subunits eIF3i and eIF3g to the 40S intersubunit face on the GTPase binding site, at a late stage in initiation. On the basis of a previous study, we demonstrate the relocation of eIF3b to the 40S intersubunit face, binding below the eIF2-Met-tRNAi(Met) ternary complex upon mRNA attachment. Our analysis reveals the deep rearrangement of eIF3 and unravels the molecular mechanism underlying eIF3 function in mRNA scanning and timing of ribosomal subunit joining.
History
DepositionMay 17, 2016-
Header (metadata) releaseJul 13, 2016-
Map releaseJul 13, 2016-
UpdateApr 18, 2018-
Current statusApr 18, 2018Processing site: PDBe / Status: Released

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Structure visualization

Movie
  • Surface view with section colored by density value
  • Surface level: 0.045
  • Imaged by UCSF Chimera
  • Download
  • Surface view colored by height
  • Surface level: 0.045
  • Imaged by UCSF Chimera
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  • Surface view with fitted model
  • Atomic models: PDB-5k0y
  • Surface level: 0.04
  • Imaged by UCSF Chimera
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Movie viewer
Structure viewerEM map:
SurfViewMolmilJmol/JSmol
Supplemental images

emd_8190.png

Downloads & links

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Map

FileDownload / File: emd_8190.map.gz / Format: CCP4 / Size: 30.5 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
AnnotationNone
Voxel sizeX=Y=Z: 2.2 Å
Density
Contour LevelBy AUTHOR: 0.04 / Movie #1: 0.045
Minimum - Maximum-0.106808044 - 0.4003597
Average (Standard dev.)0.00038981703 (±0.019687567)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions200200200
Spacing200200200
CellA=B=C: 440.0 Å
α=β=γ: 90.0 °

CCP4 map header:

modeImage stored as Reals
Å/pix. X/Y/Z2.22.22.2
M x/y/z200200200
origin x/y/z0.0000.0000.000
length x/y/z440.000440.000440.000
α/β/γ90.00090.00090.000
start NX/NY/NZ000
NX/NY/NZ329329329
MAP C/R/S123
start NC/NR/NS000
NC/NR/NS200200200
D min/max/mean-0.1070.4000.000

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Supplemental data

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Sample components

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Entire : m48S late-stage initiation complex, purified from rabbit reticulo...

EntireName: m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
Components
  • Complex: m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
    • RNA: tRNATransfer RNA
    • RNA: 18S ribosomal RNA
    • RNA: mRNAMessenger RNA
    • Protein or peptide: Eukaryotic translation initiation factor 2 subunit 1
    • Protein or peptide: ribosomal protein uS17
    • Protein or peptide: ribosomal protein uS9
    • Protein or peptide: 40S ribosomal protein S4
    • Protein or peptide: ribosomal protein uS14
    • Protein or peptide: Ribosomal protein S9 (Predicted)Ribosome
    • Protein or peptide: ribosomal protein uS13
    • Protein or peptide: Eukaryotic translation initiation factor 3 subunit GEukaryotic initiation factor 3
    • Protein or peptide: Eukaryotic translation initiation factor 3 subunit GEukaryotic initiation factor 3
    • Protein or peptide: ribosomal protein uS12
    • Protein or peptide: ribosomal protein eS19
    • Protein or peptide: eukaryotic initiation factor 2 Gamma subunit (eIF2-Gamma)
    • Protein or peptide: Eukaryotic translation initiation factor 3 subunit IEukaryotic initiation factor 3
    • Protein or peptide: ribosomal protein uS7
    • Protein or peptide: ribosomal protein eS30
    • Protein or peptide: ribosomal protein eS25
    • Protein or peptide: ribosomal protein eS7
    • Protein or peptide: 40S ribosomal protein S27
    • Protein or peptide: ribosomal protein uS15
    • Protein or peptide: ribosomal protein uS8
    • Protein or peptide: 40S ribosomal protein S21
    • Protein or peptide: ribosomal protein uS5
    • Protein or peptide: eukaryotic initiation factor 2 subunit Beta (eIF2-Beta)
    • Protein or peptide: ribosomal protein eS17
    • Protein or peptide: ribosomal protein uS2
    • Protein or peptide: ribosomal protein uS3
    • Protein or peptide: ribosomal protein uS10
    • Protein or peptide: ribosomal protein eS1
    • Protein or peptide: ribosomal protein uS11
    • Protein or peptide: ribosomal protein eS26
    • Protein or peptide: ribosomal protein eS28
    • Protein or peptide: ribosomal protein RACK1
    • Protein or peptide: ribosomal protein uS19
    • Protein or peptide: 40S ribosomal protein S8
    • Protein or peptide: ribosomal protein eS31
    • Protein or peptide: 40S ribosomal protein S6
    • Protein or peptide: 40S ribosomal protein S12
    • Protein or peptide: 40S ribosomal protein S24
    • Protein or peptide: ribosomal protein eS10

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Supramolecule #1: m48S late-stage initiation complex, purified from rabbit reticulo...

SupramoleculeName: m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
type: complex / ID: 1 / Parent: 0 / Macromolecule list: all
Molecular weightTheoretical: 2 MDa

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Macromolecule #1: tRNA

MacromoleculeName: tRNA / type: rna / ID: 1 / Details: tRNAiMet / Number of copies: 1
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 24.23151 KDa
SequenceString:
AGCAGAGUGG CGCAGCGGAA GCGUGCUGGG CCCAUAACCC AGAGGUCGAU GGAUCGAAAC CAUCCUCUGC UACCA

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Macromolecule #2: 18S ribosomal RNA

MacromoleculeName: 18S ribosomal RNA / type: rna / ID: 2 / Number of copies: 1
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 572.789812 KDa
SequenceString: UACCUGGUUG AUCCUGCCAG UAGCAUAUGC UUGUCUCAAA GAUUAAGCCA UGCAUGUCUA AGUACGCACG GCCGGUACAG UGAAACUGC GAAUGGCUCA UUAAAUCAGU UAUGGUUCCU UUGGUCGCUC GCUCCUCUCC UACUUGGAUA ACUGUGGUAA U UCUAGAGC ...String:
UACCUGGUUG AUCCUGCCAG UAGCAUAUGC UUGUCUCAAA GAUUAAGCCA UGCAUGUCUA AGUACGCACG GCCGGUACAG UGAAACUGC GAAUGGCUCA UUAAAUCAGU UAUGGUUCCU UUGGUCGCUC GCUCCUCUCC UACUUGGAUA ACUGUGGUAA U UCUAGAGC UAAUACAUGC CGACGGCGCU GACUCCCUUU GUGUGGGAUG CGUGCAUUUA UCAGAUCAAA ACCAACCCGG UC AGCGGCG GCGGCUUUGG UGACUCUAGA UAACCUCGGG CCGAUCGCAG CCCUCCGUGG CGGCGACGAC CCAUUCGAAC GUC UGCCCU AUCAACUUUC GAUGGUAGUC GCCGUGCCUA CCAUGGUGAC CACGGGUGAC GGGGAAUCAG GGUUCGAUUC CGGA GAGGG AGCCUGAGAA ACGGCUACCA CAUCCAAGGA AGGCAGCAGG CGCGCAAAUU ACCCACUCCC GACCCGGGGA GGUAG UGAC GAAAAAUAAC AAUACAGGAC UCUUUCGAGG CCCUGUAAUU GGAAUGAGUC CACUUUAAAU CCUUUAACGA GGAUCC AUU GGAGGGCAAG UCUGGUCGCA GCAGCCGCGG UAAUUCCAGC UCCAAUAGCG UAUAUUAAAG UUGCUGCAGU UAAAAAG CU CGUAGUUGGA UCUUGAGGGC CCGCCCCUCG GCGCCCCCUC GAUGUGUCCC GCGGGGCCCG AAGCGUUUAC UUUGAAAA A AUUAGAGUGU UCAAAGCAGG CCCGAGCCGC CUGGAUACCG CAGCUAGGAA UAAUGGAAUA GGACCGCGGU UCUAUUUUG UUGGUUUUCG GAACUGAGGC CAUGAUUAAG AGGGACGGCC GGGGGCAUUC GUAUUGCGCC GCUAGAGGUG AAAUUCUUGG ACCGGCGCA AGACGGACCA GAGCGAAAGC AUUUGCCAAG AAUGUUUUCA UUAAUCAAGA ACGAAAGUCG GAGGUUCGAA G ACGAUCAG AUACCGUCGU AGUUCCGACC AUAAACGAUG CCGACUGGCG AUGCGGCGGC GUUAUUCCCA UGACCCGCCG GG CAGCUUC CGGGAAACCA AAGUCUUUGG GUUCCGGGGG GAGUAUGGUU GCAAAGCUGA AACUUAAAGG AAUUGACGGA AGG GCACCA CCAGGAGUGG AGCCUGCGGC UUAAUUUGAC UCAACACGGG AAACCUCACC CGGCCCGGAC ACGGACAGGA UUGA CAGAU UGAUAGCUCU UUCUCGAUUC UGUGGGUGGU GGUGCAUGGC CGUUCUUAGU UGGUGGAGCG AUUUGUCUGG UUAAU UCCG AUAACGAACG AGACUCUGGC AUGCUAACUA GUUACGCGAC CCCCGAGCGG UCGGCGUCCC CCAACUUCUU AGAGGG ACA AGUGGCGUUC AGCCACCCGA GAUUGAGCAA UAACAGGUCU GUGAUGCCCU UAGAUGUCGG GGCUGCACGC GCGCUAC AC UGACUGGCUC AGCGUGUGCC UACCCUACGC CGGCAGGCGC GGGUAACCCG UUGAACCCCA UUCGUGAUGG GGAUCGGG G AUUGCAAUUA UUCCCCAUGA ACGAGGAAUU CCCAGUAAGU GCGGGUCAUA AGCUUGCGUU GAUUAAGUCC CUGCCCUUU GUACACACCG CCCGUCGCUA CUACCGAUUG GAUGGUUUAG UGAGGCCCUC GGAUCGGCCC GCCGGGGUCG GCCCACGGCC CUGGCGGAG CGCUGAGAAG ACGGUCGAAC UUGACUAUCU AGAGGAAGUA AAAGUCGUAA CAAGGUUUCC GUAGGUGAAC C UGCGGAAG GAUCAUUA

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Macromolecule #3: mRNA

MacromoleculeName: mRNA / type: rna / ID: 3 / Details: Beta-Globin mRNA / Number of copies: 1
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 9.603775 KDa
SequenceString:
CAGACACCAU GGUGCACCUG ACUCCUGAGG

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Macromolecule #4: Eukaryotic translation initiation factor 2 subunit 1

MacromoleculeName: Eukaryotic translation initiation factor 2 subunit 1 / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 30.633297 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString: CRFYQHKFPE VEDVVMVNVR SIAEMGAYVS LLEYNNIEGM ILLSELSRRR IRSINKLIRI GRNECVVVIR VDKEKGYIDL SKRRVSPEE AIKCEDKFTK SKTVYSILRH VAEVLEYTKD EQLESLFQRT AWVFDDKYKR PGYGAYDAFK HAVSDPSILD S LDLNEDER ...String:
CRFYQHKFPE VEDVVMVNVR SIAEMGAYVS LLEYNNIEGM ILLSELSRRR IRSINKLIRI GRNECVVVIR VDKEKGYIDL SKRRVSPEE AIKCEDKFTK SKTVYSILRH VAEVLEYTKD EQLESLFQRT AWVFDDKYKR PGYGAYDAFK HAVSDPSILD S LDLNEDER EVLINNINRR LTPQAVKIRA DIEVACYGYE GIDAVKEALR AGLNCSTETM PIKINLIAPP RYVMTTTTLE RT EGLSVLN QAMAVIKEKI EEKRGVFNV

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Macromolecule #5: ribosomal protein uS17

MacromoleculeName: ribosomal protein uS17 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 18.468826 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
MADIQTERAY QKQPTIFQNK KRVLLGETGK EKLPRYYKNI GLGFKTPKEA IEGTYIDKKC PFTGNVSIRG RILSGVVTKM KMQRTIVIR RDYLHYIRKY NRFEKRHKNM SVHLSPCFRD VQIGDIVTVG ECRPLSKTVR FNVLKVTKAA GTKKQFQKF

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Macromolecule #6: ribosomal protein uS9

MacromoleculeName: ribosomal protein uS9 / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 15.975753 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
PLQSVQVFGR KKTATAVAHC KRGNGLIKVN GRPLEMIEPR TLQYKLLEPV LLLGKERFAG VDIRVRVKGG GHVAQIYAIR QSISKALVA YYQKYVDEAS KKEIKDILIQ YDRTLLVADP RRCESKKFGG PGARARYQKS YR

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Macromolecule #7: 40S ribosomal protein S4

MacromoleculeName: 40S ribosomal protein S4 / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 29.65892 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString: MARGPKKHLK RVAAPKHWML DKLTSVFAPR PSTGPHKLRE CLPLIIFLRN KLKYALTGDE VKKICMQRFI KIDGKVRADI TYPAGFMDV ISIDKTGENF RLIYDTKGRF AVHRITPEEA KYKLCKVRKI FVGTKGIPHL VTHDARTIRY PDPLIKMNDT I QIDLETGK ...String:
MARGPKKHLK RVAAPKHWML DKLTSVFAPR PSTGPHKLRE CLPLIIFLRN KLKYALTGDE VKKICMQRFI KIDGKVRADI TYPAGFMDV ISIDKTGENF RLIYDTKGRF AVHRITPEEA KYKLCKVRKI FVGTKGIPHL VTHDARTIRY PDPLIKMNDT I QIDLETGK ITDFIKFDTG NLCMVTGGAN LGRIGVITNR ERHPGSFDVV HVKDANGNSF ATRLSNIFVI GKGNKPWISL PR GKGIRLT IAEERDKRLA AKQSSG

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Macromolecule #8: ribosomal protein uS14

MacromoleculeName: ribosomal protein uS14 / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 6.364426 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
QQLYWSHPRK FGQGSRSCRV CSNRHGLIRK YGLNMCRQCF RQYAKDIGFI KLD

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Macromolecule #9: Ribosomal protein S9 (Predicted)

MacromoleculeName: Ribosomal protein S9 (Predicted) / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 21.266166 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
WVCRKTYVTP RRPFEKSRLD QELKLIGEYG LRNKREVWRV KFTLAKIRKA ARELLTLDEK DPRRLFEGNA LLRRLVRIGV LDEGKMKLD YILGLKIEDF LERRLQTQVF KLGLAKSIHH ARVLIRQRHI RVRKQVVNIP SFIVRLDSQK HIDFSLRSPY G GGRPGRVK RKNAKKGQGG AGAG

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Macromolecule #10: ribosomal protein uS13

MacromoleculeName: ribosomal protein uS13 / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 16.170774 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
PEKFQHILRV LNTNIDGRRK IAFAITAIKG VGRRYAHVVL RKADIDLTKR AGELTEDEVE RVITIMQNPR QYKIPDWFLN RQKDVKDGK YSQVLANGLD NKLREDLERL KKIRAHRGLR HFWGLRVRGQ HTKTTGRR

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Macromolecule #11: Eukaryotic translation initiation factor 3 subunit G

MacromoleculeName: Eukaryotic translation initiation factor 3 subunit G / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 4.124495 KDa
Recombinant expressionOrganism: Homo sapiens (human)
SequenceString:
KKFGNSEFDP PGPNVATTTV SDDVSMTFIT SKEDLNCQ

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Macromolecule #12: Eukaryotic translation initiation factor 3 subunit G

MacromoleculeName: Eukaryotic translation initiation factor 3 subunit G / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 8.675697 KDa
Recombinant expressionOrganism: Homo sapiens (human)
SequenceString:
ATIRVTNLSE DTRETDLQEL FRPFGSISRI YLAKDKTTGQ SKGFAFISFH RREDAARAIA GVSGFGYDHL ILNVEWA

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Macromolecule #13: ribosomal protein uS12

MacromoleculeName: ribosomal protein uS12 / type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 15.757587 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
MGKCRGLRTA RKLRSHRRDQ KWHDKQYKKA HLGTALKANP FGGASHAKGI VLEKVGVEAK QPNSAIRKCV RVQLIKNGKK ITAFVPNDG CLNFIEENDE VLVAGFGRKG HAVGDIPGVR FKVVKVANVS LLALYKGKKE RPR

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Macromolecule #14: ribosomal protein eS19

MacromoleculeName: ribosomal protein eS19 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 15.812286 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
VTVKDVNQQE FVRALAAFLK KSGKLKVPEW VDTVKLAKHK ELAPYDENWF YTRAASTARH LYLRGGAGVG SMTKIYGGRQ RNGVMPSHF SRGSKSVARR VLQALEGLKM VEKDQDWGRK LTPQGQRDLD RIAGQVAAAK KK

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Macromolecule #15: eukaryotic initiation factor 2 Gamma subunit (eIF2-Gamma)

MacromoleculeName: eukaryotic initiation factor 2 Gamma subunit (eIF2-Gamma)
type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 45.862441 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString: QATINIGTIG HVAHGKSTVV KAISGVHTVR FKNELERNIT IKLGYANAKI YKLDDPSCPR PECYRSCGSS TPDEFPTDIP GTKGNFKLV RHVSFVDCPG HDILMATMLN GAAVMDAALL LIAGNESCPQ PQTSEHLAAI EIMKLKHILI LQNKIDLVKE S QAKEQYEQ ...String:
QATINIGTIG HVAHGKSTVV KAISGVHTVR FKNELERNIT IKLGYANAKI YKLDDPSCPR PECYRSCGSS TPDEFPTDIP GTKGNFKLV RHVSFVDCPG HDILMATMLN GAAVMDAALL LIAGNESCPQ PQTSEHLAAI EIMKLKHILI LQNKIDLVKE S QAKEQYEQ ILAFVQGTVA EGAPIIPISA QLKYNIEVVC EYIVKKIPVP PRDFTSEPRL IVIRSFDVNK PGCEVDDLKG GV AGGSILK GVLKVGQEIE VRPGIVSKDS EGKLMCKPIF SKIVSLFAEH NDLQYAAPGG LIGVGTKIDP TLCRADRMVG QVL GAVGAL PEIFTELEIS YFLLRRLLGV RTEGDKKAAK VQKLSKNEVL MVNIGSLSTG GRVSAVKADL GKIVLTNPVC TEVG EKIAL SRRVEKHWRL IGWGQIR

+
Macromolecule #16: Eukaryotic translation initiation factor 3 subunit I

MacromoleculeName: Eukaryotic translation initiation factor 3 subunit I / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 37.039328 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString: MRPILLQGHE RSITQIKYNR EGDLLFTVAK DPIVNVWYSV NGERLGTYMG HTGAVWCVDA DWDTKHVLTG SADNSCRLWD CETGKQLAL LKTNSAVRTC GFDFGGNIIM FSTDKQMGYQ CFVSFFDLRD PSQIDNNEPY MKIPCNDSKI TSAVWGPLGE C IIAGHESG ...String:
MRPILLQGHE RSITQIKYNR EGDLLFTVAK DPIVNVWYSV NGERLGTYMG HTGAVWCVDA DWDTKHVLTG SADNSCRLWD CETGKQLAL LKTNSAVRTC GFDFGGNIIM FSTDKQMGYQ CFVSFFDLRD PSQIDNNEPY MKIPCNDSKI TSAVWGPLGE C IIAGHESG ELNQYSAKSG EVLVNVKEHS RQINDIQLSR EMTMFVTASK DNTAKLFDST TLEHQKTFRT EPPRELAALS PN YEHVVVG GGQEAMDVTT TSTRIGKFEA RFFHLAFEEE FGRVKGHFGP INSVAFHPDG KSYSSGGEDG YVRIHYFDPQ YFE FEFEAR EAG

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Macromolecule #17: ribosomal protein uS7

MacromoleculeName: ribosomal protein uS7 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 21.525941 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
TPDIKLFGKW STDDVQINDI SLQDYIAVKE KYAKYLPHSA GRYAAKRFRK AQCPIVERLT NSMMMHGRNN GKKLMTVRIV KHAFEIIHL LTGENPLQVL VNAIINSGPR EDSTRIGRAG TVRRQAVDVS PLRRVNQAIW LLCTGAREAA FRNIKTIAEC L ADELINAA KGSSNSYAIK KKDELERVAK SNR

+
Macromolecule #18: ribosomal protein eS30

MacromoleculeName: ribosomal protein eS30 / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 6.741048 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
KVHGSLARVG KVRGQTLKVA KQEKKKKRTG RAKRRMQYNR RFVNVVPTFG KKKGPNANS

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Macromolecule #19: ribosomal protein eS25

MacromoleculeName: ribosomal protein eS25 / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 8.526119 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
RDKLNNLVLF DKATYDKLCK EVPNYKLITP AVVSERLKIR GSLARAALQE LLSKGLIKLV SKHRAQVIYT RNTKG

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Macromolecule #20: ribosomal protein eS7

MacromoleculeName: ribosomal protein eS7 / type: protein_or_peptide / ID: 20 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 21.716387 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
SAKIVKPNGE KPDEFESGIS QALLELEMNS DLKAQLRELN ITAAKEIEVG GGRKAIIIFV PVPQLKSFQK IQVRLVRELE KKFSGKHVV FIAQRRILPK PTRKSRTKNK QKRPRSRTLT AVHDAILEDL VFPSEIVGKR IRVKLDGSRL IKVHLDKAQQ N NVEHKVET FSGVYKKLTG KDVNFEFPEF QL

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Macromolecule #21: 40S ribosomal protein S27

MacromoleculeName: 40S ribosomal protein S27 / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 9.480186 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
MPLAKDLLHP SPEEEKRKHK KKRLVQSPNS YFMDVKCPGC YKITTVFSHA QTVVLCVGCS TVLCQPTGGK ARLTEGCSFR RKQH

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Macromolecule #22: ribosomal protein uS15

MacromoleculeName: ribosomal protein uS15 / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 17.128191 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
GRMHAPGKGL SQSALPYRRS VPTWLKLTSD DVKEQIYKLA KKGLTPSQIG VILRDSHGVA QVRFVTGNKI LRILKSKGLA PDLPEDLYH LIKKAVAVRK HLERNRKDKD AKFRLILIES RIHRLARYYK TKRVLPPNWK YESSTASALV A

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Macromolecule #23: ribosomal protein uS8

MacromoleculeName: ribosomal protein uS8 / type: protein_or_peptide / ID: 23 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 14.734357 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
VRMNVLADAL KSINNAEKRG KRQVLIRPCS KVIVRFLTVM MKHGYIGEFE IIDDHRAGKI VVNLTGRLNK CGVISPRFDV QLKDLEKWQ NNLLPSRQFG FIVLTTSAGI MDHEEARRKH TGGKILGFFF

+
Macromolecule #24: 40S ribosomal protein S21

MacromoleculeName: 40S ribosomal protein S21 / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 8.896102 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
MQSNAGEFVD LYVPRKCSAS NRIIGAKDHA SIPMNVAEVD KVTGRFNGQS KTYAICGAIR RMGESDDSIL RLAKSHGIVS QN

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Macromolecule #25: ribosomal protein uS5

MacromoleculeName: ribosomal protein uS5 / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 24.814285 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString: GKAGDKEWLP VTKLGRLVKD MKIKSLEEIY LFSLPIKESE IIDFFLGAAL KDKVLKIMPV QKQTQAGQRT RFKAFVAIGD YNGHVGLGM KCSKEVATAI RGAIILAKLS IVPVRRGYWG NKIGKPHTVR CKVTGRCGSV LVRLIPAPRG TGIISAPVPK K LLLMAGID ...String:
GKAGDKEWLP VTKLGRLVKD MKIKSLEEIY LFSLPIKESE IIDFFLGAAL KDKVLKIMPV QKQTQAGQRT RFKAFVAIGD YNGHVGLGM KCSKEVATAI RGAIILAKLS IVPVRRGYWG NKIGKPHTVR CKVTGRCGSV LVRLIPAPRG TGIISAPVPK K LLLMAGID DCYTSAGGCT ATLGNFAKAT FDAISKTYSY LTPDLWKETV FTKSPYQEFT DHLVKTHT

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Macromolecule #26: eukaryotic initiation factor 2 subunit Beta (eIF2-Beta)

MacromoleculeName: eukaryotic initiation factor 2 subunit Beta (eIF2-Beta)
type: protein_or_peptide / ID: 26 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 2.103416 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
SEKEYVEMLD RLYSKLP

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Macromolecule #27: ribosomal protein eS17

MacromoleculeName: ribosomal protein eS17 / type: protein_or_peptide / ID: 27 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 14.578988 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
MGRVRTKTVK KAARVIIEKY YTRLGNDFHT NKRVCEEIAI IPSKKLRNKI AGYVTHLMKR IQRGPVRGIS IKLQEEERER RDNYVPEVS ALDQEIIEVD PDTKEMLKLL DFGSLSNLQV TQPTVGM

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Macromolecule #28: ribosomal protein uS2

MacromoleculeName: ribosomal protein uS2 / type: protein_or_peptide / ID: 28 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 23.360791 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString: SGALDVLQMK EEDVLKFLAA GTHLGGTNLD FQMEQYIYKR KSDGIYIINL KRTWEKLLLA ARAIVAIENP ADVSVISSRN TGQRAVLKF AAATGATPIA GRFTPGTFTN QIQAAFREPR LLVVTDPRAD HQPLTEASYV NLPTIALCNT DSPLRYVDIA I PCNNKGAH ...String:
SGALDVLQMK EEDVLKFLAA GTHLGGTNLD FQMEQYIYKR KSDGIYIINL KRTWEKLLLA ARAIVAIENP ADVSVISSRN TGQRAVLKF AAATGATPIA GRFTPGTFTN QIQAAFREPR LLVVTDPRAD HQPLTEASYV NLPTIALCNT DSPLRYVDIA I PCNNKGAH SVGLMWWMLA REVLRMRGTI SREHPWEVMP DLYFYRDPEE

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Macromolecule #29: ribosomal protein uS3

MacromoleculeName: ribosomal protein uS3 / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 25.158535 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString: MAVQISKKRK FVADGIFKAE LNEFLTRELA EDGYSGVEVR VTPTRTEIII LATRTQNVLG EKGRRIRELT AVVQKRFGFP EGSVELYAE KVATRGLCAI AQAESLRYKL LGGLAVRRAC YGVLRFIMES GAKGCEVVVS GKLRGQRAKS MKFVDGLMIH S GDPVNYYV ...String:
MAVQISKKRK FVADGIFKAE LNEFLTRELA EDGYSGVEVR VTPTRTEIII LATRTQNVLG EKGRRIRELT AVVQKRFGFP EGSVELYAE KVATRGLCAI AQAESLRYKL LGGLAVRRAC YGVLRFIMES GAKGCEVVVS GKLRGQRAKS MKFVDGLMIH S GDPVNYYV DTAVRHVLLR QGVLGIKVKI MLPWDPSGKI GPKKPLPDHV SIVEPKDEIL PTTPISEQK

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Macromolecule #30: ribosomal protein uS10

MacromoleculeName: ribosomal protein uS10 / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 11.76589 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
AIHRIRITLT SRNVKSLEKV CADLIRGAKE KNLKVKGPVR MPTKTLRITT RKTPCGEGSK TWDRFQMRIH KRLIDLHSPS EIVKQITSI SIEPGVEVEV TIADA

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Macromolecule #31: ribosomal protein eS1

MacromoleculeName: ribosomal protein eS1 / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 24.944408 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString: KKVVDPFSKK DWYDVKAPAM FNIRNIGKTL VTRTQGTKIA SDGLKGRVFE VSLADLQNDE VAFRKFKLIT EDVQGKNCLT NFHGMDLTR DKMCSMVKKW QTMIEAHVDV KTTDGYLLHL FCVGFTKKCN NQIRKTSYAQ HQQVRQIRKK MMEIMTREVQ T NDLKEVVN ...String:
KKVVDPFSKK DWYDVKAPAM FNIRNIGKTL VTRTQGTKIA SDGLKGRVFE VSLADLQNDE VAFRKFKLIT EDVQGKNCLT NFHGMDLTR DKMCSMVKKW QTMIEAHVDV KTTDGYLLHL FCVGFTKKCN NQIRKTSYAQ HQQVRQIRKK MMEIMTREVQ T NDLKEVVN KLIPDSIGKD IEKACQSIYP LHDVFVRKVK MLKKPKFELG KLMELHG

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Macromolecule #32: ribosomal protein uS11

MacromoleculeName: ribosomal protein uS11 / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 14.544659 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
SLGPQVAEGE NVFGVCHIFA SFNDTFVHVT DLSGKETICR VTGGMKVKAD RDESSPYAAM LAAQDVAQRC KELGITALHI KLRATGGNR TKTPGPGAQS ALRALARSGM KIGRIEDVTP IPSDSTRRKG GRRGRRL

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Macromolecule #33: ribosomal protein eS26

MacromoleculeName: ribosomal protein eS26 / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 11.315428 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
TKKRRNNGRA KKGRGHVQPI RCTNCACCVP KDKAIKKFVI RNIVEAAAVR DISEVSVFDA YVLPKLYVKL HYCVSCAIHS KVVRNRSRE ARKDRTPPPR

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Macromolecule #34: ribosomal protein eS28

MacromoleculeName: ribosomal protein eS28 / type: protein_or_peptide / ID: 34 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 7.263394 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
RVQPIKLARV TKVLGRTGSQ GQCTQVRVEF MDDTSRSIIR NVKGPVREGD VLTLLESERE ARRL

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Macromolecule #35: ribosomal protein RACK1

MacromoleculeName: ribosomal protein RACK1 / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 34.669113 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString: TEQMTLRGTL KGHNGWVTQI ATTPQFPDMI LSASRDKTII MWKLTRDETN YGIPQRALRG HSHFVSDVVI SSDGQFALSG SWDGTLRLW DLTTGTTTRR FVGHTKDVLS VAFSSDNRQI VSGSRDKTIK LWNTLGVCKY TVQDESHSEW VSCVRFSPNS S NPIIVSCG ...String:
TEQMTLRGTL KGHNGWVTQI ATTPQFPDMI LSASRDKTII MWKLTRDETN YGIPQRALRG HSHFVSDVVI SSDGQFALSG SWDGTLRLW DLTTGTTTRR FVGHTKDVLS VAFSSDNRQI VSGSRDKTIK LWNTLGVCKY TVQDESHSEW VSCVRFSPNS S NPIIVSCG WDKLVKVWNL ANCKLKTNHI GHTGYLNTVT VSPDGSLCAS GGKDGQAMLW DLNEGKHLYT LDGGDIINAL CF SPNRYWL CAATGPSIKI WDLEGKIIVD ELKQEVISTS SKAEPPQCTS LAWSADGQTL FAGYTDNLVR VWQVTI

+
Macromolecule #36: ribosomal protein uS19

MacromoleculeName: ribosomal protein uS19 / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 15.151948 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
VEQKKKRTFR KFTYRGVDLD QLLDMSYEQL MQLYSARQRR RLSRGLRRKQ HSLLKRLRKA KKEAPPMEKP EVVKTHLRDM IILPEMVGS MVGVYNGKTF NQVEIKPEMI GHYLGEFSIT YKPVKHGR

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Macromolecule #37: 40S ribosomal protein S8

MacromoleculeName: 40S ribosomal protein S8 / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 23.902871 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString: GISRDNWHKR RKTGGKRKPY HKKRKYELGR PAANTKIGPR RIHTVGVRGG NKKYRALRLD VGNFSWGSEC CTRKTRIIDV VYNASNNEL VRTKTLVKNC IVLIDSTPYR QWYESHYALP LGRKKGAKLT PEEEEILNKK RSKKIQKKYD ERKKNAKISS L LEEQFQQG ...String:
GISRDNWHKR RKTGGKRKPY HKKRKYELGR PAANTKIGPR RIHTVGVRGG NKKYRALRLD VGNFSWGSEC CTRKTRIIDV VYNASNNEL VRTKTLVKNC IVLIDSTPYR QWYESHYALP LGRKKGAKLT PEEEEILNKK RSKKIQKKYD ERKKNAKISS L LEEQFQQG KLLACIASRP GQCGRADGYV LEGKELEFYL RKIKARKG

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Macromolecule #38: ribosomal protein eS31

MacromoleculeName: ribosomal protein eS31 / type: protein_or_peptide / ID: 38 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 8.358903 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
KKSYTTPKKN KHKRKKVKLA VLKYYKVDEN GKISRLRREC PSDECGAGVF MASHFDRHYC GKCCLTYCFN K

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Macromolecule #39: 40S ribosomal protein S6

MacromoleculeName: 40S ribosomal protein S6 / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 27.471535 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString: MKLNISFPAT GCQKLIEVDD ERKLRTFYEK RMATEVAADA LGEEWKGYVV RISGGNDKQG FPMKQGVLTH GRVRLLLSKG HSCYRPRRT GERKRKSVRG CIVDANLSVL NLVIVKKGEK DIPGLTDTTV PRRLGPKRAS RIRKLFNLSK EDDVRQYVVR K PLNKEGKK ...String:
MKLNISFPAT GCQKLIEVDD ERKLRTFYEK RMATEVAADA LGEEWKGYVV RISGGNDKQG FPMKQGVLTH GRVRLLLSKG HSCYRPRRT GERKRKSVRG CIVDANLSVL NLVIVKKGEK DIPGLTDTTV PRRLGPKRAS RIRKLFNLSK EDDVRQYVVR K PLNKEGKK PRTKAPKIQR LVTPRVLQHK RRRIALKKQR TKKNKEEAAE YAKLLAKRMK EAKEKRQEQI AKRRRLSSL

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Macromolecule #40: 40S ribosomal protein S12

MacromoleculeName: 40S ribosomal protein S12 / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 13.766122 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
GGVMDVNTAL QEVLKTALIH DGLARGIREA AKALDKRQAH LCVLASNCDE PMYVKLVEAL CAEHQINLIK VDDNKKLGEW VGLCKIDRE GKPRKVVGCS CVVVKDYGKE SQAKDVIEEY FKCKK

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Macromolecule #41: 40S ribosomal protein S24

MacromoleculeName: 40S ribosomal protein S24 / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 15.18897 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
DTVTIRTRKF MTNRLLQRKQ MVIDVLHPGK ATVPKTEIQE KLAKMYKTTP DVIFVFGFRT HFGGGKTTGF GMIYDSLDYA KKNEPKHRL ARHGLYEKKK TSRKQRKERK NRMKKVRGTA KANVGAGKKP KE

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Macromolecule #42: ribosomal protein eS10

MacromoleculeName: ribosomal protein eS10 / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Oryctolagus cuniculus (rabbit)
Molecular weightTheoretical: 11.773953 KDa
Recombinant expressionOrganism: Oryctolagus cuniculus (rabbit)
SequenceString:
MLMPKKNRIA IYELLFKEGV MVAKKDVHMP KHPELADKNV PNLHVMKAMQ SLKSRGYVKE QFAWRHFYWY LTNEGIQYLR DYLHLPPEI VPATLRRSR

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

Concentration0.5 mg/mL
BufferpH: 7.6
GridModel: Quantifoil / Material: COPPER / Mesh: 400 / Support film - Material: CARBON / Support film - topology: HOLEY / Pretreatment - Type: GLOW DISCHARGE / Pretreatment - Atmosphere: AIR
VitrificationCryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 277 K / Instrument: FEI VITROBOT MARK IV

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Electron microscopy

MicroscopeFEI TITAN KRIOS
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsC2 aperture diameter: 100.0 µm / Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELDBright-field microscopy / Cs: 0.01 mm / Nominal defocus max: 4.5 µm / Nominal defocus min: 0.8 µm / Nominal magnification: 59000
Sample stageSpecimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER / Cooling holder cryogen: NITROGEN
Image recordingFilm or detector model: FEI FALCON II (4k x 4k) / Detector mode: INTEGRATING / Digitization - Sampling interval: 14.0 µm / Digitization - Frames/image: 2-8 / Number grids imaged: 1 / Number real images: 5700 / Average exposure time: 1.5 sec. / Average electron dose: 24.0 e/Å2
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

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Image processing

CTF correctionSoftware - Name: CTFFIND (ver. 4)
Startup modelType of model: PDB ENTRY
PDB model - PDB ID:

4kzy

Initial angle assignmentType: PROJECTION MATCHING / Software - Name: RELION (ver. 1.3)
Final angle assignmentType: PROJECTION MATCHING / Software - Name: RELION (ver. 1.3)
Final reconstructionNumber classes used: 10 / Algorithm: FOURIER SPACE / Resolution.type: BY AUTHOR / Resolution: 5.8 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: RELION (ver. 1.3) / Number images used: 475000

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Atomic model buiding 1

Initial modelPDB ID:

4kzy

RefinementProtocol: FLEXIBLE FIT
Output model

PDB-5k0y:
m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

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Yorodumi

Thousand views of thousand structures

  • Yorodumi is a browser for structure data from EMDB, PDB, SASBDB, etc.
  • This page is also the successor to EM Navigator detail page, and also detail information page/front-end page for Omokage search.
  • The word "yorodu" (or yorozu) is an old Japanese word meaning "ten thousand". "mi" (miru) is to see.

Related info.:EMDB / PDB / SASBDB / Comparison of 3 databanks / Yorodumi Search / Aug 31, 2016. New EM Navigator & Yorodumi / Yorodumi Papers / Jmol/JSmol / Function and homology information / Changes in new EM Navigator and Yorodumi

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