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- EMDB-42983: Structure of the Human Respirovirus 3 Fusion Protein Bound to Cam... -
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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 4C03 and 4C06 | |||||||||
![]() | Final refinement volume. DeepEMhancer sharpened. Used for building coordinates. | |||||||||
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![]() | viral fusion protein / camelid nanobodies / viral glycoprotein / ![]() ![]() ![]() | |||||||||
Function / homology | Precursor fusion glycoprotein F0, Paramyxoviridae / Fusion glycoprotein F0 / fusion of virus membrane with host plasma membrane / ![]() ![]() ![]() | |||||||||
Biological species | ![]() ![]() ![]() ![]() ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Johnson NV / Ramamohan AR / McLellan JS | |||||||||
Funding support | 1 items
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![]() | ![]() Title: Structural basis for potent neutralization of human respirovirus type 3 by single-domain camelid antibodies Authors: Johnson NV / van Scherpenzeel RC / Bakkers MJG / Ramamohan AR / van Overveld D / Langedijk JPM / Kolkman JA / McLellan JS | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 105.5 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 18.1 KB 18.1 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 10.5 KB | Display | ![]() |
Images | ![]() | 101.1 KB | ||
Filedesc metadata | ![]() | 6 KB | ||
Others | ![]() ![]() ![]() | 117.9 MB 115.8 MB 115.8 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8v5kMC ![]() 8v62C M: atomic model generated by this map C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | Final refinement volume. DeepEMhancer sharpened. Used for building coordinates. | ||||||||||||||||||||
Voxel size | X=Y=Z: 0.94 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Additional map: Final refined volume. Sharpened map. Not DeepEMhancer sharpened.
File | emd_42983_additional_1.map | ||||||||||||
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Annotation | Final refined volume. Sharpened map. Not DeepEMhancer sharpened. | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: half map B
File | emd_42983_half_map_1.map | ||||||||||||
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Annotation | half map B | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: half map A
File | emd_42983_half_map_2.map | ||||||||||||
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Annotation | half map A | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Prefusion Human Respirovirus 3 Fusion Protein bound to Camelid na...
Entire | Name: Prefusion Human Respirovirus 3 Fusion Protein bound to Camelid nanobodies 4C03 and 4C06 |
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Components |
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-Supramolecule #1: Prefusion Human Respirovirus 3 Fusion Protein bound to Camelid na...
Supramolecule | Name: Prefusion Human Respirovirus 3 Fusion Protein bound to Camelid nanobodies 4C03 and 4C06 type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#3 |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 277 KDa |
-Macromolecule #1: Fusion glycoprotein F0
Macromolecule | Name: Fusion glycoprotein F0 / type: protein_or_peptide / ID: 1 / Number of copies: 3 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 55.364965 KDa |
Recombinant expression | Organism: ![]() ![]() |
Sequence | String: QIDITKLQHV GVLVNSPKGM KISQNFETRY LILSLIPKIE DSNSCGDQQI KQYKRLLDRL IIPLYDGLRL QKDVIVTNQE SNENTDPRT ERFFGGVIGT IALGVATSAQ ITAAVALVEA KQARSDIEKL KEAIRDTNKA VQSVQSSPGN LIVAIKSVQD Y VNKEIVPC ...String: QIDITKLQHV GVLVNSPKGM KISQNFETRY LILSLIPKIE DSNSCGDQQI KQYKRLLDRL IIPLYDGLRL QKDVIVTNQE SNENTDPRT ERFFGGVIGT IALGVATSAQ ITAAVALVEA KQARSDIEKL KEAIRDTNKA VQSVQSSPGN LIVAIKSVQD Y VNKEIVPC IARLGCEACG LLLGLALDQH YSELTNIFGD NIGSLQEKGI KLQGIASLYR TNITEIFTTS TVDKYDIYDL LF TESIKVR VIDVDLNDYS ITLQVRLPLL TRLLNTQIYK VDSISYNIQN REWYIPLPSH IMTKGAFLGG ADVKECIEAF SSY ICPSDP GFVLNHEMES CLSGNISQCP RTTVTSDIVP RYAFVNGGVV ANCITTTCTC NGIGNRINQP PDQGVKIITH KECN TIGIN GMLFNTNKEG TLAFYTPDDI TLNNSVALNP IDISIELNKA KSDLEESKEW IRRSNQKLDS IEDKIEEILS KIYHI ENEI ARIKKLIGEA EPEA UniProtKB: Fusion glycoprotein F0 |
-Macromolecule #2: Camelid Nanobody 4C03
Macromolecule | Name: Camelid Nanobody 4C03 / type: protein_or_peptide / ID: 2 / Number of copies: 3 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() ![]() |
Molecular weight | Theoretical: 13.726373 KDa |
Recombinant expression | Organism: ![]() ![]() ![]() |
Sequence | String: EVQLVESGGG LVRAGGSLRL SCAASLRDLH TRTFYMGWFR QDPGKEREFV AAIDWNTGAA SYPDSVKGRF TISKDNARNA VYLQMNNLK PEDTAVYYCA VGRPPLNRPT LAYYWGQGTQ VTVSS |
-Macromolecule #3: Camelid Nanobody 4C06
Macromolecule | Name: Camelid Nanobody 4C06 / type: protein_or_peptide / ID: 3 / Number of copies: 3 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() ![]() |
Molecular weight | Theoretical: 12.487816 KDa |
Recombinant expression | Organism: ![]() ![]() ![]() |
Sequence | String: EVQLVESGGG LVQPGGSLRL SCSASGSLST IKALGWYRRA PGRERELVAS ITSAGETNYA DSAKGRFTVS TDNAKNTVDL RMNSLKPED TAVYYCYAES FVLNIYWGQG TQVTVSSG |
-Macromolecule #4: 2-acetamido-2-deoxy-beta-D-glucopyranose
Macromolecule | Name: 2-acetamido-2-deoxy-beta-D-glucopyranose / type: ligand / ID: 4 / Number of copies: 3 / Formula: NAG |
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Molecular weight | Theoretical: 221.208 Da |
Chemical component information | ![]() ChemComp-NAG: |
-Experimental details
-Structure determination
Method | ![]() |
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Aggregation state | particle |
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Sample preparation
Buffer | pH: 8 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | TFS GLACIOS |
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Electron beam | Acceleration voltage: 200 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD![]() |
Image recording | Film or detector model: FEI FALCON IV (4k x 4k) / Average electron dose: 50.0 e/Å2 |