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- EMDB-17975: Pseudorabies virus primary enveloped (perinuclear) C-capsid (US3 ... -
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Open data
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Basic information
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Title | Pseudorabies virus primary enveloped (perinuclear) C-capsid (US3 KO) vertices determined in situ | ||||||||||||||||||||||||
![]() | Sharpened map of primary enveloped particle (perinuclear) C-capsid vertices | ||||||||||||||||||||||||
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Biological species | ![]() | ||||||||||||||||||||||||
Method | subtomogram averaging / ![]() | ||||||||||||||||||||||||
![]() | Prazak V / Grange M / Vasishtan D | ||||||||||||||||||||||||
Funding support | ![]() ![]()
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![]() | ![]() Title: NECing goes: flexibility of the herpesvirus nuclear egress complex Authors: Prazak V / Mironova Y / Vasishtan D / Hagen C / Laugks U / Jensen Y / Sanders S / Heumann JM / Bosse JB / Klupp B / Mettenleiter TC / Grange M / Grunewald K | ||||||||||||||||||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 25.4 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 18.5 KB 18.5 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 8 KB | Display | ![]() |
Images | ![]() | 187.4 KB | ||
Filedesc metadata | ![]() | 4.2 KB | ||
Others | ![]() ![]() ![]() ![]() | 25.5 MB 25.4 MB 25.5 MB 25.1 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | C: citing same article ( |
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | Sharpened map of primary enveloped particle (perinuclear) C-capsid vertices | ||||||||||||||||||||
Voxel size | X=Y=Z: 3.55 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Additional map: Unfiltered map of primary enveloped particle (perinuclear) C-capsid...
File | emd_17975_additional_1.map | ||||||||||||
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Annotation | Unfiltered map of primary enveloped particle (perinuclear) C-capsid vertices | ||||||||||||
Projections & Slices |
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Density Histograms |
-Additional map: Sharpened map of primary enveloped particle (perinuclear) A-,...
File | emd_17975_additional_2.map | ||||||||||||
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Annotation | Sharpened map of primary enveloped particle (perinuclear) A-, B- and partially filled capsid vertices | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: Half map 1 of primary enveloped particle (perinuclear)...
File | emd_17975_half_map_1.map | ||||||||||||
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Annotation | Half map 1 of primary enveloped particle (perinuclear) C-capsid vertices | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: Half map 1 of primary enveloped particle (perinuclear)...
File | emd_17975_half_map_2.map | ||||||||||||
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Annotation | Half map 1 of primary enveloped particle (perinuclear) C-capsid vertices | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Suid herpesvirus 1 strain Kaplan
Entire | Name: ![]() |
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Components |
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-Supramolecule #1: Suid herpesvirus 1 strain Kaplan
Supramolecule | Name: Suid herpesvirus 1 strain Kaplan / type: virus / ID: 1 / Parent: 0 / NCBI-ID: 33703 / Sci species name: Suid herpesvirus 1 strain Kaplan / Virus type: VIRION / Virus isolate: STRAIN / Virus enveloped: No / Virus empty: No |
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Virus shell | Shell ID: 1 / Name: kevin |
-Experimental details
-Structure determination
Method | ![]() |
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![]() | subtomogram averaging |
Aggregation state | cell |
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Sample preparation
Buffer | pH: 7.5 |
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Vitrification | Cryogen name: ETHANE-PROPANE / Instrument: HOMEMADE PLUNGER |
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Electron microscopy
Microscope | FEI POLARA 300 |
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Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD![]() |
Sample stage | Cooling holder cryogen: NITROGEN |
Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Detector mode: COUNTING / Average electron dose: 3.4 e/Å2 |
Experimental equipment | ![]() Model: Tecnai Polara / Image courtesy: FEI Company |