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- EMDB-10491: Structure of the vertebrate gamma-Tubulin Ring Complex -

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Basic information

Entry
Database: EMDB / ID: EMD-10491
TitleStructure of the vertebrate gamma-Tubulin Ring Complex
Map dataCryo-EM single particle analysis reconstruction of the vertebrate gamma-Tubulin Ring Complex
Sample
  • Complex: Vertebrate gamma-Tubulin Ring Complex
    • Protein or peptide: x 17 types
Function / homology
Function and homology information


mitotic spindle microtubule / polar microtubule / gamma-tubulin complex / dense body / microtubule nucleation / gamma-tubulin binding / microtubule organizing center / cytoplasmic microtubule organization / spindle pole / actin cytoskeleton ...mitotic spindle microtubule / polar microtubule / gamma-tubulin complex / dense body / microtubule nucleation / gamma-tubulin binding / microtubule organizing center / cytoplasmic microtubule organization / spindle pole / actin cytoskeleton / microtubule / cytoskeleton / focal adhesion / centrosome / GTP binding / ATP binding / nucleus / plasma membrane / cytoplasm
Similarity search - Function
Gamma tubulin / Gamma tubulin complex component, C-terminal / Gamma-tubulin complex component, C-terminal domain superfamily / Gamma tubulin complex component C-terminal / Gamma-tubulin complex component protein / Gamma tubulin complex component protein, N-terminal / Gamma tubulin complex component N-terminal / Actins signature 1. / Actin, conserved site / Actins signature 2. ...Gamma tubulin / Gamma tubulin complex component, C-terminal / Gamma-tubulin complex component, C-terminal domain superfamily / Gamma tubulin complex component C-terminal / Gamma-tubulin complex component protein / Gamma tubulin complex component protein, N-terminal / Gamma tubulin complex component N-terminal / Actins signature 1. / Actin, conserved site / Actins signature 2. / Actin/actin-like conserved site / Actins and actin-related proteins signature. / Actin / Actin family / Actin / Tubulin / Tubulin, C-terminal / Tubulin C-terminal domain / Tubulin, conserved site / Tubulin subunits alpha, beta, and gamma signature. / Tubulin/FtsZ family, C-terminal domain / Tubulin/FtsZ-like, C-terminal domain / Tubulin/FtsZ, C-terminal / Tubulin/FtsZ, 2-layer sandwich domain / Tubulin/FtsZ family, GTPase domain / Tubulin/FtsZ family, GTPase domain / Tubulin/FtsZ, GTPase domain / Tubulin/FtsZ, GTPase domain superfamily / ATPase, nucleotide binding domain
Similarity search - Domain/homology
Gamma-tubulin complex component / Gamma-tubulin complex component 3 homolog / Actin, cytoplasmic 1 / Tubulin gamma-1 chain / Gamma-tubulin complex component / Gamma tubulin ring protein
Similarity search - Component
Biological speciesXenopus laevis (African clawed frog) / African clawed frog (African clawed frog)
Methodsingle particle reconstruction / cryo EM / Resolution: 4.8 Å
AuthorsZupa E / Pfeffer S
CitationJournal: Nature / Year: 2020
Title: Insights into the assembly and activation of the microtubule nucleator γ-TuRC.
Authors: Peng Liu / Erik Zupa / Annett Neuner / Anna Böhler / Justus Loerke / Dirk Flemming / Thomas Ruppert / Till Rudack / Christoph Peter / Christian Spahn / Oliver J Gruss / Stefan Pfeffer / Elmar Schiebel /
Abstract: Microtubules are dynamic polymers of α- and β-tubulin and have crucial roles in cell signalling, cell migration, intracellular transport and chromosome segregation. They assemble de novo from αβ- ...Microtubules are dynamic polymers of α- and β-tubulin and have crucial roles in cell signalling, cell migration, intracellular transport and chromosome segregation. They assemble de novo from αβ-tubulin dimers in an essential process termed microtubule nucleation. Complexes that contain the protein γ-tubulin serve as structural templates for the microtubule nucleation reaction. In vertebrates, microtubules are nucleated by the 2.2-megadalton γ-tubulin ring complex (γ-TuRC), which comprises γ-tubulin, five related γ-tubulin complex proteins (GCP2-GCP6) and additional factors. GCP6 is unique among the GCP proteins because it carries an extended insertion domain of unknown function. Our understanding of microtubule formation in cells and tissues is limited by a lack of high-resolution structural information on the γ-TuRC. Here we present the cryo-electron microscopy structure of γ-TuRC from Xenopus laevis at 4.8 Å global resolution, and identify a 14-spoked arrangement of GCP proteins and γ-tubulins in a partially flexible open left-handed spiral with a uniform sequence of GCP variants. By forming specific interactions with other GCP proteins, the GCP6-specific insertion domain acts as a scaffold for the assembly of the γ-TuRC. Unexpectedly, we identify actin as a bona fide structural component of the γ-TuRC with functional relevance in microtubule nucleation. The spiral geometry of γ-TuRC is suboptimal for microtubule nucleation and a controlled conformational rearrangement of the γ-TuRC is required for its activation. Collectively, our cryo-electron microscopy reconstructions provide detailed insights into the molecular organization, assembly and activation mechanism of vertebrate γ-TuRC, and will serve as a framework for the mechanistic understanding of fundamental biological processes associated with microtubule nucleation, such as meiotic and mitotic spindle formation and centriole biogenesis.
History
DepositionNov 13, 2019-
Header (metadata) releaseDec 11, 2019-
Map releaseDec 11, 2019-
UpdateMar 4, 2020-
Current statusMar 4, 2020Processing site: PDBe / Status: Released

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Structure visualization

Movie
  • Surface view with section colored by density value
  • Surface level: 0.04
  • Imaged by UCSF Chimera
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  • Surface view colored by cylindrical radius
  • Surface level: 0.04
  • Imaged by UCSF Chimera
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  • Surface view with fitted model
  • Atomic models: PDB-6tf9
  • Surface level: 0.04
  • Imaged by UCSF Chimera
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Movie viewer
Structure viewerEM map:
SurfViewMolmilJmol/JSmol
Supplemental images

Downloads & links

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Map

FileDownload / File: emd_10491.map.gz / Format: CCP4 / Size: 64 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
AnnotationCryo-EM single particle analysis reconstruction of the vertebrate gamma-Tubulin Ring Complex
Voxel sizeX=Y=Z: 2.1 Å
Density
Contour LevelBy AUTHOR: 0.04 / Movie #1: 0.04
Minimum - Maximum-0.07939351 - 0.247138
Average (Standard dev.)0.0008742602 (±0.006880397)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions256256256
Spacing256256256
CellA=B=C: 537.6 Å
α=β=γ: 90.0 °

CCP4 map header:

modeImage stored as Reals
Å/pix. X/Y/Z2.12.12.1
M x/y/z256256256
origin x/y/z0.0000.0000.000
length x/y/z537.600537.600537.600
α/β/γ90.00090.00090.000
start NX/NY/NZ-200-200-200
NX/NY/NZ401401401
MAP C/R/S123
start NC/NR/NS000
NC/NR/NS256256256
D min/max/mean-0.0790.2470.001

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Supplemental data

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Additional map: Cryo-EM single particle analysis reconstruction of the vertebrate...

Fileemd_10491_additional.map
AnnotationCryo-EM single particle analysis reconstruction of the vertebrate gamma-Tubulin Ring Complex filtered according to local resolution
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

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Sample components

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Entire : Vertebrate gamma-Tubulin Ring Complex

EntireName: Vertebrate gamma-Tubulin Ring Complex
Components
  • Complex: Vertebrate gamma-Tubulin Ring Complex
    • Protein or peptide: Helix 1
    • Protein or peptide: Belt helices 1,2,3,4
    • Protein or peptide: Belt helix 5
    • Protein or peptide: Belt helix 6
    • Protein or peptide: Belt helix 7
    • Protein or peptide: Belt helices 8,9,10
    • Protein or peptide: Belt helices 11,12
    • Protein or peptide: Belt helices 13,14,15 and Helix 2
    • Protein or peptide: Belt helix 16
    • Protein or peptide: Gamma-tubulin complex component 3 homolog
    • Protein or peptide: Gamma-tubulin complex component 2
    • Protein or peptide: Gamma tubulin ring protein
    • Protein or peptide: Tubulin gamma-1 chain
    • Protein or peptide: Gamma-tubulin complex component
    • Protein or peptide: Gamma-tubulin complex component
    • Protein or peptide: Belt helix 17
    • Protein or peptide: Actin, cytoplasmic 1

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Supramolecule #1: Vertebrate gamma-Tubulin Ring Complex

SupramoleculeName: Vertebrate gamma-Tubulin Ring Complex / type: complex / ID: 1 / Parent: 0 / Macromolecule list: all
Source (natural)Organism: Xenopus laevis (African clawed frog)
Molecular weightTheoretical: 2.2 MDa

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Macromolecule #1: Helix 1

MacromoleculeName: Helix 1 / type: protein_or_peptide / ID: 1 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 2.079272 KDa
SequenceString:
AAAAAAAAAA AAAAAAAAAA AAAAAAAAA

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Macromolecule #2: Belt helices 1,2,3,4

MacromoleculeName: Belt helices 1,2,3,4 / type: protein_or_peptide / ID: 2 / Number of copies: 4 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 942.027 Da
SequenceString:
AAAAAAAAAA AAA

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Macromolecule #3: Belt helix 5

MacromoleculeName: Belt helix 5 / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 2.221427 KDa
SequenceString:
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA A

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Macromolecule #4: Belt helix 6

MacromoleculeName: Belt helix 6 / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 1.652805 KDa
SequenceString:
AAAAAAAAAA AAAAAAAAAA AAA

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Macromolecule #5: Belt helix 7

MacromoleculeName: Belt helix 7 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 1.297416 KDa
SequenceString:
AAAAAAAAAA AAAAAAAA

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Macromolecule #6: Belt helices 8,9,10

MacromoleculeName: Belt helices 8,9,10 / type: protein_or_peptide / ID: 6 / Number of copies: 3 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 1.084182 KDa
SequenceString:
AAAAAAAAAA AAAAA

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Macromolecule #7: Belt helices 11,12

MacromoleculeName: Belt helices 11,12 / type: protein_or_peptide / ID: 7 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 1.013105 KDa
SequenceString:
AAAAAAAAAA AAAA

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Macromolecule #8: Belt helices 13,14,15 and Helix 2

MacromoleculeName: Belt helices 13,14,15 and Helix 2 / type: protein_or_peptide / ID: 8 / Number of copies: 4 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 1.15526 KDa
SequenceString:
AAAAAAAAAA AAAAAA

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Macromolecule #9: Belt helix 16

MacromoleculeName: Belt helix 16 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 1.226338 KDa
SequenceString:
AAAAAAAAAA AAAAAAA

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Macromolecule #10: Gamma-tubulin complex component 3 homolog

MacromoleculeName: Gamma-tubulin complex component 3 homolog / type: protein_or_peptide / ID: 10 / Number of copies: 5 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 103.789352 KDa
SequenceString: MAVPDQKSPN VLLQNLCCRI LGKGEADVAQ QFQYAVRVIG SNFAPTVERD EFLVTEKIKK EFVRQRREAD GALFSELHRK LQSQGVLKN RWSILYLLLS LSEDPRKQPN KTSSFAALFA QALPRDAHST PYYYARPQSL PLSYQDRNVQ CAQNAASIGS S GISSIGMY ...String:
MAVPDQKSPN VLLQNLCCRI LGKGEADVAQ QFQYAVRVIG SNFAPTVERD EFLVTEKIKK EFVRQRREAD GALFSELHRK LQSQGVLKN RWSILYLLLS LSEDPRKQPN KTSSFAALFA QALPRDAHST PYYYARPQSL PLSYQDRNVQ CAQNAASIGS S GISSIGMY ALNGPTPQSI IQGQSNQTPN MGDALRQQLG SRLAWTLAAG QQPSQQSTTT KGLPNTVSRN VPRTRREGDS SG SVEITET SLVRDLLYVF QGIDGKFVKM CNSENCYKVD GKVAVSKSLK DITSKLSELG WLHNKIKKYT DQRSLDRAFG LVG QSFCAA LHQELKEYYR LLSVLHSQLQ VEDDQGVNLG VESSLTLRRL LVWTFDPKIR LKTLAALVDH CQGRKGGELA SAVH AYTKT GDPYMRSLVQ HILGLVAYPI LNFLYRWIYD GELEDTYHEF FVASDPVVKT DRLWHDKYSL RKSMIPSFMT MDQSR KVLL IGKSINFLHQ VCHDQTPASK AMAVGKSAES PKDAAELFTD LENAFQTKID AAYFDTSKYL LDVLNKNYNL LEHMQA MRR YLLLGQGDFI RHLMDLLKPE LVRPATTLYQ HNLTGILETA VRATNAQFDN PEILKRLDVR LLEVSPGDTG WDVFSLD YH VDGPIATVFT RECMSHYLRV FNFLWRAKRM EYILTDIWKG HMCNAKLLKG MPELSGVLHQ CHILASEMVH FIHQMQYY I TFEVLECSWD ELWNKVLKAQ DLDHIIAAHD VFLDTIISRC LLDSESRALL NQLRAVFDQI IEFQNAQDAL YRAALEELQ QRLQFEERKK ERESEGEWGV TAAEEDVENK RIQEFQESIP KMRSQLRILT HFYQGIVQQF LVLLTTSTDE SLRFLSFRLD FNEHYKARE PRLRVSMGTR GRRSFHV

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Macromolecule #11: Gamma-tubulin complex component 2

MacromoleculeName: Gamma-tubulin complex component 2 / type: protein_or_peptide / ID: 11 / Number of copies: 5 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 103.468312 KDa
SequenceString: MSEFRIHHDV NELISLLHVF GLEGADVYID LLQKNRTPYV TTSVSTHSAK VKIAEFSRTP DDFLKKYEEL KSKNTRNLDP LVYLLSKLI EDKETLQYLQ QNAKDKAELA TSSVTSVSLP IAPNTSKISM QELEELRRQL ETATVAVSCS HQPVEVLRKF L RDKLNKKH ...String:
MSEFRIHHDV NELISLLHVF GLEGADVYID LLQKNRTPYV TTSVSTHSAK VKIAEFSRTP DDFLKKYEEL KSKNTRNLDP LVYLLSKLI EDKETLQYLQ QNAKDKAELA TSSVTSVSLP IAPNTSKISM QELEELRRQL ETATVAVSCS HQPVEVLRKF L RDKLNKKH TGHPVPVFPS WVYERPALTG DFMSFSNPST DVTVSIGTLP LPSQETCLVE DLLYILIGVD GRYISVQPLV GR QSRSFSV EQNLDSSVKE LVNRILPVAT NYSTVTRFVE ENSSFEYGQV NHALGAAMRT LGKEYMILIS QLEHLQRQGL LSL QKLWFY IQPTLRTMEV LASIATSLNK GECFGGATLS LLHDRTFGYT GDSQAQELCL YLTKAASAPY FDILERWIYR GIIN DPYSE FMVEEHELQK EKIQEDYNDK YWDQRYTIVQ QQIPSFLQKV ADKILSTGKY LNVVRECGHD VTCPDAKEIT YTLKE QAYV ERIEKAYNYA SKVLLDFLME EEELVAHLRS IKHYFLMDQG DFFVHFMDLT EEELKKPVDD IIPTRLEALL ELALRM STA NTDPFKDDLK IELMPHDLIT QLLRVLAIET HQEKALINSD PTELALSGLE SFSFDYIVKW PLSLIINRKA LTRYQML FR HMFYCKHVER LLCNVWISNK TAKQFSLHSA KWFAGAFTLR QRMLNFVQNI QYYMMFEVME PTWHILEKNL KSASNIDD V LSHHTSFLDN CLKDCMLTNP ELLKIFSKLM SVCVMFTNCL QRFTQSMQVQ TEMEHLTLEH GTMMGPPTQC ERTEEALKK KLTSKYLEEH IDKFPSSFGF ESTINNFDSN FSAHLMDLLD KLSMYSTSDC EHSMINIIYR LDFNGFYTER LKQLSSERNQ KSAPLLGPA QHAVSTK

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Macromolecule #12: Gamma tubulin ring protein

MacromoleculeName: Gamma tubulin ring protein / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 184.506188 KDa
SequenceString: MLSFNLRICG MSSEADRLEE LVEYLEQSNG IQISDLHAVL ELLVELSGTG PPQLLPPKRD YFKNNKYVGR NVKYQGYDYY DVQVFEADL GTTVAYQELE ISTTIQRTLQ IMEAAPGTGL PALSFFSQND LSSDKFEKET RGSLFGALVH SRTNDMDIKL D MPPVPENA ...String:
MLSFNLRICG MSSEADRLEE LVEYLEQSNG IQISDLHAVL ELLVELSGTG PPQLLPPKRD YFKNNKYVGR NVKYQGYDYY DVQVFEADL GTTVAYQELE ISTTIQRTLQ IMEAAPGTGL PALSFFSQND LSSDKFEKET RGSLFGALVH SRTNDMDIKL D MPPVPENA DLSGLAIKVP QSIDQSEDEG FQSASNMTPD SQSEPSMTPD IDVWEAVLTY GPSKRRCWER IGCPPGKREE PY VTEAGRE AFDKLYKLHE GGLQILSATT LQPQLVLLEE TDLVKAVLNV LIGVVSSTFS YNQALQSFAV KQGVYISGTS PDN VSSLLT QVAEYGTYYT RLSHFSLLTV LDSSHSNGLV FQAFTSGLRK YLQYYRACVL STPASLTLLT ISFLFRKLGR QLRY LAELC CIGTLVTSAT RGISTAFPTG VKLLSYLYKE ALENSSNENY PVLLSLLKTS CEPYTRFIYD WVYSGVFRDV CGEFM IQVN EDYLGFRDKR YWTHGYVLIS KEVEDCVPVF LKHVANEIYI CGKTINLLKL CCPKHYICWS DIPVPRISVT FSLEEL KEM EKDCAVYVAR MERIARHSCI SKEQKALQTE IARQELIIQA RETTEKVFET FKDRKLAEKL SLDTKKRELF QKLKDQY EK EQERRLTTKQ EEADDDFSYA REIRDREKRL KALEEELELK TRQELIEHYS RLSEEATRKE QRALWKLQRH KLETTRLK F FLEEQKRMQD LVANFPVDIC EENLGVLPDG EISHQTDNTN DAGLGNIENE KSVPEQHALH NNNDEVYTAQ NCISKSESL CVDVTLPTEN VHSQTSNASV LGVPSFDSNL CTPDVDIIDF LPTLPSENQE VAVVQSLVDD ALISIGSDLN TDTKDKESLC ALKSDLQES STGSEYDFKT ILKPIACTQV SQGHIKIGEY SSNVQPARPR WSTHGHSSDS NIKIGNYVPD INVHQPKHSQ H GHSSDSNI NISDHMSDVE PRLPRLNLHG HISTGHIKVG EYASDVEPST PRHSVHGHAS QGNIKIGENV SDVKLSRPRW NI HGHVSDA NIKIGENTTE IAPLRPRWNI HGHASQSHIK IGELVSDIEP SQPRRTPFGH PSQSSIPIGD QPVEKYAQKS ESE VHSSNS TIQHLLYSNI PDKNKDTGGT LTDSPVPVPD QGNSNDDTEK RSSTLEQRVQ AADSVCDGEA SPNTAQSLPC MSDT LDLGT NGEENVGNDD HTWEKQQEYL KGLAEKYCLE KYQDSYELMS HPPVLHLYSN VMPNRFSFQT DSDIKSATDE TTVQL IELL SLPVLMKYSV TAPMVSHVYL VNKAIVDYYF VELKMERHFE AMRHFLLMED GEFAQSLSDM LFEKLGSGQT PSELLN PLV LNSILNKALQ YSLHGDSSLA SNLTFALKYL PEVFTPTAPD ALSCLELKYK VDWPLNIVIT DTCMNKYSRI FSFLLQL KH MVWTLRDVWF HLKRTALVNQ ASNSVQYRQL QLYRHEMQHF VKVIQGYIAN QILHVTWCEF RNKLSAVSNL EEIYKTHA D YLNKALFRGL LTEKAAPLMN IIHSIFSLIL KFRLQLISQS WICDTGKQMA VHPNFGLMQQ SYNTFKYYSD FLFEVVSKL VNRGYQPHLE DFLLRINFNS YYKQS

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Macromolecule #13: Tubulin gamma-1 chain

MacromoleculeName: Tubulin gamma-1 chain / type: protein_or_peptide / ID: 13 / Number of copies: 14 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 51.226719 KDa
SequenceString: MPREIITLQL GQCGNQIGFE FWKQLCAEHG ISPEGIVEEF ATEGTDRKDV FFYQADDEHY IPRAVLLDLE PRVIHSILNS PYANLYNPE NIYLSEHGGG AGNNWASGFS QGEKIHEDIF DIIDREADGS DSLEGFVLCH SIAGGTGSGL GSYLLERLND R YPKKLVQT ...String:
MPREIITLQL GQCGNQIGFE FWKQLCAEHG ISPEGIVEEF ATEGTDRKDV FFYQADDEHY IPRAVLLDLE PRVIHSILNS PYANLYNPE NIYLSEHGGG AGNNWASGFS QGEKIHEDIF DIIDREADGS DSLEGFVLCH SIAGGTGSGL GSYLLERLND R YPKKLVQT YSVFPNQDEM SHVVVQPYNS LLTLKRLTQN ADCVVVLDNT ALNRIATDRL HIQNPSFSQI NQLVSTIMSA ST TTLRYPG YMNNDLIGLI ASLIPTPRLH FLMTGYTPLT TDQSVASVRK TTVLDVMRRL LQPKNVMVST GRDRQTNHCY IAI LNIIQG EVDPTQVHKS LQRIRERKLA NFIPWGPASI QVALSRKSPY LPSAHRVSGL MMANHTNISS LFERTCRQYD KLRK REAFL EQFRKEDIFK DNFDELDNSR EIVQQLIDEY HAATRPDYIS WGTQDK

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Macromolecule #14: Gamma-tubulin complex component

MacromoleculeName: Gamma-tubulin complex component / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 117.577633 KDa
SequenceString: MAHWTRFERD QEGDIKKLVS LMSGIQDDQD GNFQQALQFA WSNFRFHRYL DVSSHTVLRT LEGIFEKLVV HSDLEKAESW KRLTEEFLL LPLPNTEGTK TDSHFAVLSL LLCLSDSPSN HDYTEKPRKK ENDEQEPFDW GKYLREGEDI EFSPDADTPE W SEASEEED ...String:
MAHWTRFERD QEGDIKKLVS LMSGIQDDQD GNFQQALQFA WSNFRFHRYL DVSSHTVLRT LEGIFEKLVV HSDLEKAESW KRLTEEFLL LPLPNTEGTK TDSHFAVLSL LLCLSDSPSN HDYTEKPRKK ENDEQEPFDW GKYLREGEDI EFSPDADTPE W SEASEEED AQEPPSREDS GIQVDRTPLE DPEKKGAPPL VSWKVGEPDA RSWLEQHIVH QYWTSRAPRF SHSSHLHSNL SA IWDQHLY TTDPLYTPDD KTIVTETQVI RETLWLLSGV KKLLIFQLND GKVNVRNDII VTHMTQNCLR SVLEQIAAYG QVV FRLQKF IDEITGHGSE VPLPGTLPTA KKTTEAPFRT YQAFMWALYK YFISFKEELT EIEKCIINKD ETVTLAIVLD KLAP RLAQL KVLHRVFSTG IAEVPPDTRN VVRASHLLNT LYKAILDYDN VGEASEQTVS LLFCLWVETV RPYLEIVDEW IVHGN LFDP AKEFIIQRNK DVPFNHRDFW YATYTLYSVS EKTENEDKMS DNASASSGSD QAPAGRQHTM VSFLKPVLKQ IIMAGK SMQ LLKNLKCRTA LQQDSSRDSD RKSLYTLFLE SVQSRLQHGN DSVPDIITEQ QVNKLSLIKM QSIVAKHLEL DEVHDPL LA INFVRLYLEQ SDFLETFTCN EVCVDRSSES VTCQSFELTL RSCLYPHIGK QYLECCGNLM YTLKKDYRLV EYLQAMRN F FLLEAGDTMY DFYTPIFDKI REKEPWLNLS YLNVQIQEAV GQRYPDDSTR LSVSFESVDL AKKKLPVHTL DGLILSYKV PWPVDIVISS ECQKIYNQVF LLLLLIKWAK YSLDVLQFNE LGNASENEST KEGATVEPFP LPPLTSPSEP KGQQIHRMFL LRVKLMHFV NSLHNYLMTR ILHSTGLEFQ HQVEEAKDLD QLIKIHYRYL STIHDRCLLR EKVSSVKEAI MKVLNVVLMF A DRWHAGLG AWKKESIVKM ESDFTNCHKF LVKVLNKAVC RGSFPHLESL ALSLMAGMEQ S

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Macromolecule #15: Gamma-tubulin complex component

MacromoleculeName: Gamma-tubulin complex component / type: protein_or_peptide / ID: 15 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 76.122961 KDa
SequenceString: MIHELLLALS GYPGSIFTWN KRTGLQVSQD IPFLHPGETS VLNRLCKLGT DYIRFTEFIE QYTGHVQQQD HHPSQQGQVG LHGIYLRAF CRGLDSILQP YRQALLDLEQ EFLADPHLSI SHINYSLDQF HLLFPSIMVV VEQIKSQKIH GCQILETVYK H SCGGLPPV ...String:
MIHELLLALS GYPGSIFTWN KRTGLQVSQD IPFLHPGETS VLNRLCKLGT DYIRFTEFIE QYTGHVQQQD HHPSQQGQVG LHGIYLRAF CRGLDSILQP YRQALLDLEQ EFLADPHLSI SHINYSLDQF HLLFPSIMVV VEQIKSQKIH GCQILETVYK H SCGGLPPV RSALEKTLAV CHGVMYKQLS AWMLHGLLLD QYEEFFVRQG SSSGNLAAAF EEEEDDLGIG GLTGKQLREL QD LRLIEEE NMLAPSLKQF SLRAEMLPSY IPVRVAEKIL FVGESVQMFE NQNVNMSRTG SILKNQEDTF AAELHRLKQQ PLF SLVDFE SVLDRIRSTV AEHLWKLMVE ESDLLGQLKI IKDFYLLGRG ELFQAFIDVA QNMLKTPPTA VTEHDVNVAF QLSA HKVLL DDDNLLPLLN LTIDYHGKEH KDTSQPREGP FRDMSPREAP TSGWAALGLS YKVQWPLHIL FTPAVLEKYN VVFKY LLSV RRVQSELQHC WALQMQRKHL ESNKTDAIKW RLQNHMAFLV DNLQYYLQVD VLESQFSQLL QQINSTRDFE SIRLAH DHF LSNLLAQSFI LLKPVFHCLN EILELCHSFC SLVSQNLGPL DERGAGQLDI LVKGFSCQSS LLFRILSSVR NHQINPD LA QLLLRLDYNK YYTQAGGTLG SFGL

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Macromolecule #16: Belt helix 17

MacromoleculeName: Belt helix 17 / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 1.368494 KDa
SequenceString:
AAAAAAAAAA AAAAAAAAA

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Macromolecule #17: Actin, cytoplasmic 1

MacromoleculeName: Actin, cytoplasmic 1 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: African clawed frog (African clawed frog)
Molecular weightTheoretical: 41.812684 KDa
SequenceString: MEDDIAALVV DNGSGMCKAG FAGDDAPRAV FPSIVGRPRH QGVMVGMGQK DSYVGDEAQS KRGILTLKYP IEHGIVTNWD DMEKIWHHT FYNELRVAPE EHPVLLTEAP LNPKANREKM TQIMFETFNT PAMYVAIQAV LSLYASGRTT GIVMDSGDGV T HTVPIYEG ...String:
MEDDIAALVV DNGSGMCKAG FAGDDAPRAV FPSIVGRPRH QGVMVGMGQK DSYVGDEAQS KRGILTLKYP IEHGIVTNWD DMEKIWHHT FYNELRVAPE EHPVLLTEAP LNPKANREKM TQIMFETFNT PAMYVAIQAV LSLYASGRTT GIVMDSGDGV T HTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY SFTTTAEREI VRDIKEKLCY VALDFEQEMA TAASSSSLEK SY ELPDGQV ITIGNERFRC PEALFQPSFL GMESCGIHET TYNSIMKCDV DIRKDLYANT VLSGGTTMYP GIADRMQKEI TAL APSTMK IKIIAPPERK YSVWIGGSIL ASLSTFQQMW ISKQEYDESG PSIVHRKCF

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

Concentration0.011 mg/mL
BufferpH: 8
Component:
ConcentrationFormulaName
1.0 mMMgCl2magnesium chloride
1.0 mMGTPGuanosine triphosphate
100.0 mMNaClSodium chlorideSodium Chloride
1.0 mMEGTAEthylene glycol tetraacetic acid
50.0 mMHEPESpiperazineethanesulfonic acid
0.02 %C58H114O26Tween 20
0.1 mg/mLgamma-tubulin antigenic C-terminal peptide2
GridMaterial: COPPER / Mesh: 300 / Support film - Material: CARBON / Support film - topology: HOLEY / Pretreatment - Type: GLOW DISCHARGE
VitrificationCryogen name: ETHANE / Chamber humidity: 70 % / Chamber temperature: 295 K / Instrument: FEI VITROBOT MARK IV

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Electron microscopy

MicroscopeFEI TITAN KRIOS
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsC2 aperture diameter: 70.0 µm / Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELDBright-field microscopy / Cs: 2.7 mm / Nominal defocus max: 3.5 µm / Nominal defocus min: 0.5 µm / Nominal magnification: 42000
Sample stageSpecimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER / Cooling holder cryogen: NITROGEN
Image recordingFilm or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Number grids imaged: 4 / Number real images: 9463 / Average electron dose: 46.0 e/Å2
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

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Image processing

Particle selectionNumber selected: 5482328
CTF correctionSoftware - Name: RELION (ver. 3.0 Beta)
Startup modelType of model: OTHER
Details: 3D initial model from manually selected particles in Relion
Initial angle assignmentType: MAXIMUM LIKELIHOOD / Software - Name: RELION (ver. 3.0 Beta)
Final 3D classificationSoftware - Name: RELION (ver. 3.0 Beta)
Final angle assignmentType: MAXIMUM LIKELIHOOD / Software - Name: RELION (ver. 3.0 Beta)
Final reconstructionApplied symmetry - Point group: C1 (asymmetric) / Resolution.type: BY AUTHOR / Resolution: 4.8 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: RELION (ver. 3.0 Beta) / Number images used: 46096

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Atomic model buiding 1

Initial modelPDB ID:
RefinementSpace: REAL / Protocol: FLEXIBLE FIT
Output model

PDB-6tf9:
Structure of the vertebrate gamma-Tubulin Ring Complex

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