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Yorodumi- SASDBZ9: Immunoglobulin domains 4,5,6,7 of Nucleoporin Pom152 (Pom152 Ig-4... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDBZ9 |
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Sample | Immunoglobulin domains 4,5,6,7 of Nucleoporin Pom152 (Pom152 Ig-4,5,6,7: amino acids 718-1148)
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Function / homology | Function and homology information nuclear pore transmembrane ring / spindle pole body duplication / nuclear pore organization / structural constituent of nuclear pore / nucleocytoplasmic transport / nuclear envelope lumen / mRNA transport / nuclear pore / protein-membrane adaptor activity / nuclear periphery ...nuclear pore transmembrane ring / spindle pole body duplication / nuclear pore organization / structural constituent of nuclear pore / nucleocytoplasmic transport / nuclear envelope lumen / mRNA transport / nuclear pore / protein-membrane adaptor activity / nuclear periphery / cell periphery / protein import into nucleus / nuclear envelope / nuclear membrane / mitochondrion Similarity search - Function |
Biological species | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (yeast) |
Citation | Date: 2017 Feb Title: Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex Authors: Upla P / Kim S / Sampathkumar P / Dutta K / Cahill S / Chemmama I / Williams R / Bonanno J / Rice W / Stokes D / Cowburn D / Almo S / Sali A / Rout M |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Models
Model #1112 | Type: dummy / Software: DAMMIN / Radius of dummy atoms: 2.75 A / Chi-square value: 1.942 Search similar-shape structures of this assembly by Omokage search (details) |
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-Sample
Sample | Name: Immunoglobulin domains 4,5,6,7 of Nucleoporin Pom152 (Pom152 Ig-4,5,6,7: amino acids 718-1148) Specimen concentration: 0.50-10.00 |
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Buffer | Name: 10mM HEPES, 150mM NaCl, 10%(v/v) glycerol, 5mM DTT / pH: 7.5 |
Entity #579 | Type: protein / Description: Nucleoporin POM152 / Formula weight: 49.038 / Num. of mol.: 1 Source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) References: UniProt: P39685 Sequence: RVKPSASLKL HHDLKLCLGD HSSVPVALKG QGPFTLTYDI IETFSSKRKT FEIKEIKTNE YVIKTPVFTT GGDYILSLVS IKDSTGCVVG LSQPDAKIQV RRDIPSAAFN FFEPIKEAKI KHGSVTEIPL KLSGEGPFTV KFKHMDYDGN IVKEFENKFQ NSYKPALKVS ...Sequence: RVKPSASLKL HHDLKLCLGD HSSVPVALKG QGPFTLTYDI IETFSSKRKT FEIKEIKTNE YVIKTPVFTT GGDYILSLVS IKDSTGCVVG LSQPDAKIQV RRDIPSAAFN FFEPIKEAKI KHGSVTEIPL KLSGEGPFTV KFKHMDYDGN IVKEFENKFQ NSYKPALKVS KEGLYQLVDI RDSSCQGNVI YRNSLYKVSF LEKPKFAIQD NHHITKVTEN LFSKEEVCQG MEGTVDLALF GSPPFILEYD LMAPNGHIST KKIQVATKYA SLKLPNQIPG EYITTIKAIF DGNYGESDIH FREHQSELII KQTVHPIPDV AFADGGKTLR ACAANVDQIS FLEPINLKFL QGESPFSITF SVYHESTSRT DQYTIDNIDS ENFSFEKLYE GMKLGNHAIT IDSVVDANGC VNSLISGPRN QILVSITDAP KEGHHHHHH |
-Experimental information
Beam | Instrument name: Stanford Synchrotron Radiation Lightsource (SSRL) BL4-2 City: Stanford, CA / 国: USA / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.098 Å / Dist. spec. to detc.: 1.7 mm | ||||||||||||||||||||||||||||||||||||
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Detector | Name: Rayonix MX225-HE | ||||||||||||||||||||||||||||||||||||
Scan | Title: Immunoglobulin domains 4,5,6,7 of Nucleoporin Pom152 (Pom152 Ig-4,5,6,7: amino acids 718-1148) Measurement date: Apr 12, 2015 / Storage temperature: 15 °C / Cell temperature: 15 °C / Exposure time: 1 sec. / Number of frames: 20 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 4.5a / Number of points: 283 /
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Result | Type of curve: merged Comments: Guinier Rg and I(0) were calculated using AutoRg. The experimental MW was estimated using SAXSMOW.
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