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Open data
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Basic information
Entry | Database: EMDB / ID: EMD-30946 | |||||||||
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Title | Staphylothermus marinus amylopullulanase -SmApu | |||||||||
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![]() | amylopullulanase / ![]() | |||||||||
Function / homology | Glycoside hydrolase family 57, N-terminal domain / Glycosyl hydrolase family 57 / ![]() ![]() ![]() ![]() | |||||||||
Biological species | ![]() ![]() ![]() ![]() | |||||||||
Method | ![]() ![]() ![]() | |||||||||
![]() | Li D / Li X | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Staphylothermus marinus amylopullulanase -SmApu Authors: Li D / Li X | |||||||||
History |
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Structure visualization
Movie |
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Structure viewer | EM map: ![]() ![]() ![]() |
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 10.9 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 14 KB 14 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 10.7 KB | Display | ![]() |
Images | ![]() | 90 KB | ||
Masks | ![]() | 103 MB | ![]() | |
Filedesc metadata | ![]() | 5.5 KB | ||
Others | ![]() ![]() | 80.9 MB 80.8 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7e1yMC M: atomic model generated by this map C: citing same article ( |
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Similar structure data |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
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Voxel size | X=Y=Z: 1.014 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
-Mask #1
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Projections & Slices |
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Density Histograms |
-Half map: #2
File | emd_30946_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #1
File | emd_30946_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
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Sample components
-Entire : The octamer of glycoside hydrolase family 57.
Entire | Name: The octamer of glycoside hydrolase family 57. |
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Components |
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-Supramolecule #1: The octamer of glycoside hydrolase family 57.
Supramolecule | Name: The octamer of glycoside hydrolase family 57. / type: complex / ID: 1 / Parent: 0 / Macromolecule list: all |
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Source (natural) | Organism: ![]() ![]() |
-Macromolecule #1: Glycoside hydrolase, family 57
Macromolecule | Name: Glycoside hydrolase, family 57 / type: protein_or_peptide / ID: 1 / Number of copies: 8 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() Strain: ATCC 43588 / DSM 3639 / JCM 9404 / F1 |
Molecular weight | Theoretical: 75.983641 KDa |
Recombinant expression | Organism: ![]() ![]() ![]() |
Sequence | String: LEVLDKYSSL IKPKLINNIE AYMVFDKPAH KPNAEAKIYV LLNNHGSRRD IHYKIVSIDR NREVFSKRIN VDEKKFLIET ISIETPDKP GRFCYKLFID NEQIDNTCFL VGDPSSREQM YFTIVWHHHQ APNYLPDGRI HGPWAYIYVW SDLLKPYGKG P YHYHSVML ...String: LEVLDKYSSL IKPKLINNIE AYMVFDKPAH KPNAEAKIYV LLNNHGSRRD IHYKIVSIDR NREVFSKRIN VDEKKFLIET ISIETPDKP GRFCYKLFID NEQIDNTCFL VGDPSSREQM YFTIVWHHHQ APNYLPDGRI HGPWAYIYVW SDLLKPYGKG P YHYHSVML NIHPHFKATY NLSPSLLRQW QIAVEKGVEF VNGEKYDPNH EKIRLVEETL NNYREALFKG QIDVLTSIYA HT IGGFLTD VLGATNIVEE EIRYGKEVTS KIMGNNYNPQ GIWTPEMAFS MKLIPIYYDL DIKYTVLDDK FHFFHAEGNK DSQ YEPYMV IDTESKKYIT VFFRDHDLSD ILGFRNNFYS EPHAWRNAYE FALRVAEKWF DKNVKVLTIA LDGENWMSFS VNPP LTAYF LDKMIIYLET LSDNKFIKLS TLREIYNKVP ANRILTNIPT NSWLGTFRKW RGEVPQHEEY WIKTYSVYRK LLAYE EMIG GRDEFSNEAR WALWHALDSD YWWAEFWLPK IIDTWLSVAE NILNNRINKI QIIDVRPASE FYEDEKAGLV VTIRNQ LEK EIRVSFAIGG TGFSSVNNDL ETVKMNPNSS YTRIIPVKAK FIGKHKMVVS AISKGLIIDS KIIDINVKPK LLPNPRL EH HHHHH UniProtKB: ![]() |
-Experimental details
-Structure determination
Method | ![]() ![]() |
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Aggregation state | particle |
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Sample preparation
Concentration | 2.0 mg/mL |
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Buffer | pH: 7.5 |
Staining | Type: NEGATIVE / Material: Uranyl acetate |
Grid | Material: COPPER |
Vitrification | Cryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 277 K / Instrument: FEI VITROBOT MARK I |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD![]() |
Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Detector mode: COUNTING / Average exposure time: 8.0 sec. / Average electron dose: 64.0 e/Å2 |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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Image processing
-Atomic model buiding 1
Refinement | Space: REAL / Protocol: AB INITIO MODEL |
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Output model | ![]() PDB-7e1y: |