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Yorodumi- PDB-1aaw: THE STRUCTURAL BASIS FOR THE ALTERED SUBSTRATE SPECIFICITY OF THE... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1aaw | ||||||
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Title | THE STRUCTURAL BASIS FOR THE ALTERED SUBSTRATE SPECIFICITY OF THE R292D ACTIVE SITE MUTANT OF ASPARTATE AMINOTRANSFERASE FROM E. COLI | ||||||
Components | ASPARTATE AMINOTRANSFERASE | ||||||
Keywords | AMINOTRANSFERASE | ||||||
Function / homology | Function and homology information L-phenylalanine biosynthetic process from chorismate via phenylpyruvate / L-tyrosine-2-oxoglutarate transaminase activity / L-phenylalanine biosynthetic process / aspartate transaminase / L-aspartate:2-oxoglutarate aminotransferase activity / pyridoxal phosphate binding / protein homodimerization activity / identical protein binding / cytoplasm / cytosol Similarity search - Function | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2.4 Å | ||||||
Authors | Almo, S.C. / Smith, D.L. / Danishefsky, A.T. / Ringe, D. | ||||||
Citation | Journal: Protein Eng. / Year: 1994 Title: The structural basis for the altered substrate specificity of the R292D active site mutant of aspartate aminotransferase from E. coli. Authors: Almo, S.C. / Smith, D.L. / Danishefsky, A.T. / Ringe, D. #1: Journal: Biochemistry / Year: 1991 Title: Activity and Structure of the Active Site Mutants R386Y and R386F of Escherichia Coli Aspartate Aminotransferase Authors: Danishefsky, A.T. / Onnufer, J.J. / Petsko, G.A. / Ringe, D. #2: Journal: Biochemistry / Year: 1989 Title: 2.8 Angstroms Resolution Crystal Structure of an Active Site Mutant of Aspartate Aminotransferase from Escherichia Coli Authors: Smith, D.L. / Almo, S.C. / Toney, M.D. / Ringe, D. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1aaw.cif.gz | 82.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1aaw.ent.gz | 62.7 KB | Display | PDB format |
PDBx/mmJSON format | 1aaw.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1aaw_validation.pdf.gz | 389.8 KB | Display | wwPDB validaton report |
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Full document | 1aaw_full_validation.pdf.gz | 410.1 KB | Display | |
Data in XML | 1aaw_validation.xml.gz | 12.1 KB | Display | |
Data in CIF | 1aaw_validation.cif.gz | 17.2 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/aa/1aaw ftp://data.pdbj.org/pub/pdb/validation_reports/aa/1aaw | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: ALA 20 - PRO 21 OMEGA ANGLE = 258.164 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 2: CIS PROLINE - PRO 140 / 3: CIS PROLINE - PRO 196 4: ASP 200 - PRO 201 OMEGA ANGLE = 115.757 PEPTIDE BOND DEVIATES SIGNIFICANTLY FROM TRANS CONFORMATION 5: RESIDUE PLP 409 IS BOUND TO LYS 258 FORMING A PROTONATED SCHIFF BASE LINKAGE BETWEEN NZ LYS 258 AND C4A PLP 409. | ||||||||
Details | THE MOLECULE IS A DIMER. TO GENERATE THE OTHER CHAIN ONE MUST APPLY THE CRYSTALLOGRAPHIC SYMMETRY OPERATION (X, 86.9-Y, 80.0-Z) TO THE COORDINATES IN THIS ENTRY. |
-Components
#1: Protein | Mass: 43619.215 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / Production host: Escherichia coli (E. coli) / References: UniProt: P00509, aspartate transaminase |
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#2: Chemical | ChemComp-PLP / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 3.12 Å3/Da / Density % sol: 60.61 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 7.5 / Method: vapor diffusion / Details: referred to J.Mol.Biol. 191.301-302 1986 | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 2.4 Å / Num. obs: 15069 / % possible obs: 72 % |
-Processing
Software |
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Refinement | Rfactor obs: 0.208 / Highest resolution: 2.4 Å | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Highest resolution: 2.4 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 2.4 Å / Lowest resolution: 5 Å / Num. reflection obs: 15069 / σ(I): 2 / Rfactor obs: 0.208 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS Biso mean: 15 Å2 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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