[English] 日本語
Yorodumi Papers
- Database of articles cited by EMDB/PDB/SASBDB data -

+
Search query

Keywords
Structure methods
Author
Journal
IF

-
Structure paper

TitleStructural basis for sugar perception by gustatory receptors.
Journal, issue, pagesScience, Vol. 383, Issue 6685, Page eadj2609, Year 2024
Publish dateFeb 23, 2024
AuthorsDemin Ma / Meiqin Hu / Xiaotong Yang / Qiang Liu / Fan Ye / Weijie Cai / Yong Wang / Ximing Xu / Shenghai Chang / Ruiying Wang / Wei Yang / Sheng Ye / Nannan Su / Minrui Fan / Haoxing Xu / Jiangtao Guo /
PubMed AbstractInsects rely on a family of seven transmembrane proteins called gustatory receptors (GRs) to encode different taste modalities, such as sweet and bitter. We report structures of sweet taste ...Insects rely on a family of seven transmembrane proteins called gustatory receptors (GRs) to encode different taste modalities, such as sweet and bitter. We report structures of sweet taste receptors GR43a and GR64a in the apo and sugar-bound states. Both GRs form tetrameric sugar-gated cation channels composed of one central pore domain (PD) and four peripheral ligand-binding domains (LBDs). Whereas GR43a is specifically activated by the monosaccharide fructose that binds to a narrow pocket in LBDs, disaccharides sucrose and maltose selectively activate GR64a by binding to a larger and flatter pocket in LBDs. Sugar binding to LBDs induces local conformational changes, which are subsequently transferred to the PD to cause channel opening. Our studies reveal a structural basis for sugar recognition and activation of GRs.
External linksScience / PubMed:38305684
MethodsEM (single particle)
Resolution2.5 - 3.1 Å
Structure data

EMDB-36410, PDB-8jm9:
The cryo-EM structure of insect gustatory receptor Gr43a from Drosophila melanogaster
Method: EM (single particle) / Resolution: 2.6 Å

EMDB-36411, PDB-8jma:
The cryo-EM structure of insect gustatory receptor Gr43a from Drosophila melanogaster in complex with fructose
Method: EM (single particle) / Resolution: 2.5 Å

EMDB-36417, PDB-8jme:
The cryo-EM structure of insect gustatory receptor Gr64a from Drosophila melanogaster
Method: EM (single particle) / Resolution: 2.5 Å

EMDB-36421, PDB-8jmh:
The cryo-EM structure of insect gustatory receptor Gr64a from Drosophila melanogaster in complex with sucrose
Method: EM (single particle) / Resolution: 2.5 Å

EMDB-36422, PDB-8jmi:
The cryo-EM structure of insect gustatory receptor Gr64a from Drosophila melanogaster in complex with maltose
Method: EM (single particle) / Resolution: 2.6 Å

EMDB-38133, PDB-8x82:
The cryo-EM structure of insect gustatory receptor Gr43a I418A from Drosophila melanogaster
Method: EM (single particle) / Resolution: 2.8 Å

EMDB-38134, PDB-8x83:
The cryo-EM structure of insect gustatory receptor Gr43a I418A from Drosophila melanogaster in complex with fructose
Method: EM (single particle) / Resolution: 2.8 Å

EMDB-38135, PDB-8x84:
The cryo-EM structure of insect gustatory receptor Gr43a I418A from Drosophila melanogaster in complex with fructose and calcium
Method: EM (single particle) / Resolution: 3.1 Å

Chemicals

ChemComp-FRU:
beta-D-fructofuranose / Fructose

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER / Water

ChemComp-CA:
Unknown entry

Source
  • drosophila melanogaster (fruit fly)
KeywordsMEMBRANE PROTEIN / gustatory receptor / Gr43a / ligand-gated ion channel / fructose / Gr64a / sucrose / maltose

+
About Yorodumi Papers

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Papers

Database of articles cited by EMDB/PDB/SASBDB data

  • Database of articles cited by EMDB, PDB, and SASBDB entries
  • Using PubMed data

Related info.:EMDB / PDB / SASBDB / Yorodumi / EMN Papers / Changes in new EM Navigator and Yorodumi

Read more