[English] 日本語
Yorodumi Papers
- Database of articles cited by EMDB/PDB/SASBDB data -

+
Search query

Keywords
Structure methods
Author
Journal
IF

-
Structure paper

TitleCSPP1 stabilizes growing microtubule ends and damaged lattices from the luminal side.
Journal, issue, pagesJ Cell Biol, Vol. 222, Issue 4, Year 2023
Publish dateApr 3, 2023
AuthorsCyntha M van den Berg / Vladimir A Volkov / Sebastian Schnorrenberg / Ziqiang Huang / Kelly E Stecker / Ilya Grigoriev / Sania Gilani / Kari-Anne M Frikstad / Sebastian Patzke / Timo Zimmermann / Marileen Dogterom / Anna Akhmanova /
PubMed AbstractMicrotubules are dynamic cytoskeletal polymers, and their organization and stability are tightly regulated by numerous cellular factors. While regulatory proteins controlling the formation of ...Microtubules are dynamic cytoskeletal polymers, and their organization and stability are tightly regulated by numerous cellular factors. While regulatory proteins controlling the formation of interphase microtubule arrays and mitotic spindles have been extensively studied, the biochemical mechanisms responsible for generating stable microtubule cores of centrioles and cilia are poorly understood. Here, we used in vitro reconstitution assays to investigate microtubule-stabilizing properties of CSPP1, a centrosome and cilia-associated protein mutated in the neurodevelopmental ciliopathy Joubert syndrome. We found that CSPP1 preferentially binds to polymerizing microtubule ends that grow slowly or undergo growth perturbations and, in this way, resembles microtubule-stabilizing compounds such as taxanes. Fluorescence microscopy and cryo-electron tomography showed that CSPP1 is deposited in the microtubule lumen and inhibits microtubule growth and shortening through two separate domains. CSPP1 also specifically recognizes and stabilizes damaged microtubule lattices. These data help to explain how CSPP1 regulates the elongation and stability of ciliary axonemes and other microtubule-based structures.
External linksJ Cell Biol / PubMed:36752787 / PubMed Central
MethodsEM (tomography)
Structure data

EMDB-15236: Microtubules
Method: EM (tomography)

EMDB-15237: Microtubules in presence of CSPP-L
Method: EM (tomography)

EMDB-15238: Microtubules in presence of CSPP-L and vinblastine
Method: EM (tomography)

EMDB-15239: Microtubules in presence of CSPP-L and vinblastine
Method: EM (tomography)

EMDB-15245: Taxol-stabilized microtubules in presence of CSPP-L
Method: EM (tomography)

EMDB-15246: Microtubules in presence of vinblastine
Method: EM (tomography)

EMDB-15247: Microtubules in presence of CSPP-L and vinblastine
Method: EM (tomography)

EMDB-15248: Microtubules in presence of vinblastine
Method: EM (tomography)

EMDB-15249: Microtubules
Method: EM (tomography)

EMDB-15250: Microtubules in presence of CSPP-L and vinblastine
Method: EM (tomography)

EMDB-15251: Microtubules in presence of CSPP-L and vinblastine
Method: EM (tomography)

Source
  • Sus scrofa (pig)

+
About Yorodumi Papers

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Papers

Database of articles cited by EMDB/PDB/SASBDB data

  • Database of articles cited by EMDB, PDB, and SASBDB entries
  • Using PubMed data

Related info.:EMDB / PDB / SASBDB / Yorodumi / EMN Papers / Changes in new EM Navigator and Yorodumi

Read more