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Structure paper

TitleStructural identification of vasodilator binding sites on the SUR2 subunit.
Journal, issue, pagesNat Commun, Vol. 13, Issue 1, Page 2675, Year 2022
Publish dateMay 13, 2022
AuthorsDian Ding / Jing-Xiang Wu / Xinli Duan / Songling Ma / Lipeng Lai / Lei Chen /
PubMed AbstractATP-sensitive potassium channels (K), composed of Kir6 and SUR subunits, convert the metabolic status of the cell into electrical signals. Pharmacological activation of SUR2- containing K channels by ...ATP-sensitive potassium channels (K), composed of Kir6 and SUR subunits, convert the metabolic status of the cell into electrical signals. Pharmacological activation of SUR2- containing K channels by class of small molecule drugs known as K openers leads to hyperpolarization of excitable cells and to vasodilation. Thus, K openers could be used to treat cardiovascular diseases. However, where these vasodilators bind to K and how they activate the channel remains elusive. Here, we present cryo-EM structures of SUR2A and SUR2B subunits in complex with Mg-nucleotides and P1075 or levcromakalim, two chemically distinct K openers that are specific to SUR2. Both P1075 and levcromakalim bind to a common site in the transmembrane domain (TMD) of the SUR2 subunit, which is between TMD1 and TMD2 and is embraced by TM10, TM11, TM12, TM14, and TM17. These K openers synergize with Mg-nucleotides to stabilize SUR2 in the NBD-dimerized occluded state to activate the channel.
External linksNat Commun / PubMed:35562524 / PubMed Central
MethodsEM (single particle)
Resolution3.1 - 3.4 Å
Structure data

EMDB-32024, PDB-7vlr:
Structure of SUR2B in complex with Mg-ATP/ADP
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-32025, PDB-7vls:
Structure of SUR2B in complex with MgATP/ADP and P1075
Method: EM (single particle) / Resolution: 3.3 Å

EMDB-32026, PDB-7vlt:
Structure of SUR2B in complex with Mg-ATP/ADP and levcromakalim
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-32027, PDB-7vlu:
Structure of SUR2A in complex with Mg-ATP/ADP and P1075
Method: EM (single particle) / Resolution: 3.3 Å

Chemicals

ChemComp-Y01:
CHOLESTEROL HEMISUCCINATE

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM / Adenosine diphosphate

ChemComp-MG:
Unknown entry

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM / Adenosine triphosphate

ChemComp-ESV:
1-cyano-2-(2-methylbutan-2-yl)-3-pyridin-3-yl-guanidine

ChemComp-ETJ:
(3S,4R)-2,2-dimethyl-3-oxidanyl-4-(2-oxidanylidenepyrrolidin-1-yl)-3,4-dihydrochromene-6-carbonitrile / Cromakalim

Source
  • rattus norvegicus (Norway rat)
KeywordsMEMBRANE PROTEIN / SUR2B / ABC transporter / P1075 / levcromakalim / SUR2A

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