[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 93 items for (author: yvon & m)

EMDB-50071:
Cryo-EM structure of the icosahedral lumazine synthase from Vicia faba.
Method: single particle / : Chee M, Trapani S, Hoh F, Lai Kee Him J, Yvon M, Blanc S, Bron P

PDB-9ez8:
Cryo-EM structure of the icosahedral lumazine synthase from Vicia faba.
Method: single particle / : Chee M, Trapani S, Hoh F, Lai Kee Him J, Yvon M, Blanc S, Bron P

EMDB-15903:
Automated simulation-based refinement of maltoporin into a cryo-EM density
Method: single particle / : Yvonnesdotter L, Rovsnik U, Blau C, Lycksell M, Howard RJ, Lindahl E

PDB-8b7v:
Automated simulation-based refinement of maltoporin into a cryo-EM density
Method: single particle / : Yvonnesdotter L, Rovsnik U, Blau C, Lycksell M, Howard RJ, Lindahl E

EMDB-16376:
CryoEM structure of a tungsten-containing aldehyde oxidoreductase from Aromatoleum aromaticum
Method: single particle / : Winiarska A, Ramirez-Amador F, Hege D, Gemmecker Y, Prinz S, Hochberg G, Heider J, Szaleniec M, Schuller JM

PDB-8c0z:
CryoEM structure of a tungsten-containing aldehyde oxidoreductase from Aromatoleum aromaticum
Method: single particle / : Winiarska A, Ramirez-Amador F, Hege D, Gemmecker Y, Prinz S, Hochberg G, Heider J, Szaleniec M, Schuller JM

EMDB-15894:
KimA from B. subtilis with nucleotide second-messenger c-di-AMP bound
Method: single particle / : Vonck J, Wieferig JP

EMDB-15895:
Upright KimA dimer with bound c-di-AMP from B. subtilis
Method: single particle / : Vonck J, Wieferig JP

PDB-8b70:
KimA from B. subtilis with nucleotide second-messenger c-di-AMP bound
Method: single particle / : Vonck J, Wieferig JP

PDB-8b71:
Upright KimA dimer with bound c-di-AMP from B. subtilis
Method: single particle / : Vonck J, Wieferig JP

EMDB-11953:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Composite Map
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-11954:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 2)
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-14810:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Consensus Map
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-14811:
SARS-CoV-2 S 2P trimer in complex with monovalent DARPin R2 (State 1) - Focused Refinement
Method: single particle / : Hurdiss DL, Drulyte I

EMDB-25448:
Negative-stain EM reconstruction of SpFN_1B-06-PL, a SARS-CoV-2 spike fused to H.pylori ferritin nanoparticle vaccine candidate
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25449:
RFN_131, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Receptor-Binding Domain
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25450:
pCoV146, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike Receptor-Binding and N-Terminal Domains
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25451:
pCoV111, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike S1 Subunit
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-22995:
Spike protein trimer
Method: single particle / : Asarnow D, Faust B, Bohn M, Bulkley D, Manglik A, Craik CS, Cheng Y

EMDB-13428:
Pfu sArlG (PF0333, N-d31-ArlG)
Method: single particle / : Umrekar TR, Winterborn YB, Sivabalasarma S, Brantl J, Albers SV, Beeby M

EMDB-12675:
GLIC, pentameric ligand gated ion channel, pH 3 State 2
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-12677:
GLIC, pentameric ligand-gated ion channel, pH 5, state 2
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-12678:
GLIC, pentameric ligand-gated ion channel, pH 7 state 2
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-11202:
GLIC pentameric ligand-gated ion channel, pH 7
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-11208:
GLIC pentameric ligand-gated ion channel, pH 5
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-11209:
GLIC pentameric ligand-gated ion channel, pH 3
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

PDB-6zgd:
GLIC pentameric ligand-gated ion channel, pH 7
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

PDB-6zgj:
GLIC pentameric ligand-gated ion channel, pH 5
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

PDB-6zgk:
GLIC pentameric ligand-gated ion channel, pH 3
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-22993:
SARS-CoV-2 spike glycoprotein:Fab 5A6 complex I
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-22994:
SARS-CoV-2 Spike protein in complex with Fab 2H4
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-22997:
SARS-CoV-2 spike glycoprotein:Fab 3D11 complex
Method: single particle / : Asarnow D, Charles C, Cheng Y

EMDB-23707:
SARS-CoV-2 Spike:5A6 Fab complex I focused refinement
Method: single particle / : Asarnow D, Cheng Y

EMDB-23709:
SARS-CoV-2 Spike:Fab 3D11 complex focused refinement
Method: single particle / : Asarnow D, Cheng Y

PDB-7kqb:
SARS-CoV-2 spike glycoprotein:Fab 5A6 complex I
Method: single particle / : Asarnow D, Charles C, Cheng Y

PDB-7kqe:
SARS-CoV-2 spike glycoprotein:Fab 3D11 complex
Method: single particle / : Asarnow D, Charles C, Cheng Y

PDB-7m71:
SARS-CoV-2 Spike:5A6 Fab complex I focused refinement
Method: single particle / : Asarnow D, Cheng Y

PDB-7m7b:
SARS-CoV-2 Spike:Fab 3D11 complex focused refinement
Method: single particle / : Asarnow D, Cheng Y

EMDB-23211:
Cryo-EM structure of human ACE2 receptor bound to protein encoded by vaccine candidate BNT162b1
Method: single particle / : Lees JA, Han S

EMDB-23215:
Cryo-EM structure of protein encoded by vaccine candidate BNT162b2
Method: single particle / : Lees JA, Han S

PDB-7l7f:
Cryo-EM structure of human ACE2 receptor bound to protein encoded by vaccine candidate BNT162b1
Method: single particle / : Lees JA, Han S

PDB-7l7k:
Cryo-EM structure of protein encoded by vaccine candidate BNT162b2
Method: single particle / : Lees JA, Han S

EMDB-21389:
Negative Staining Reconstruction of Tryptase Tetramer bound to E104 Fab
Method: single particle / : Koerber JT, Lazarus B, Maun H, Estevez A, Ciferri C

EMDB-20714:
Full length Glycine receptor reconstituted in lipid nanodisc in Apo/Resting conformation
Method: single particle / : Kumar A, Basak S, Chakrapani S

EMDB-20715:
Full length Glycine receptor reconstituted in lipid nanodisc in Gly-bound desensitized conformation
Method: single particle / : Kumar A, Basak S, Chakrapani S

EMDB-20731:
Full length Glycine receptor reconstituted in lipid nanodisc in Gly/PTX-bound open/blocked conformation
Method: single particle / : Kumar A, Basak S, Chakrapani S

EMDB-21234:
Full length Glycine receptor reconstituted in lipid nanodisc in Gly/IVM-conformation (State-1)
Method: single particle / : Kumar A, Basak S, Chakrapani S

EMDB-21236:
Full length Glycine receptor reconstituted in lipid nanodisc in Gly/IVM-conformation (State-2)
Method: single particle / : Kumar A, Basak S, Chakrapani S

EMDB-21237:
Full length Glycine receptor reconstituted in lipid nanodisc in Gly/IVM-conformation (State-3)
Method: single particle / : Kumar A, Basak S, Chakrapani S

PDB-6ubs:
Full length Glycine receptor reconstituted in lipid nanodisc in Apo/Resting conformation
Method: single particle / : Kumar A, Basak S, Chakrapani S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more