[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 54 items for (author: shahid & t)

EMDB-16017:
Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.
Method: single particle / : Karki S, Javanainen M, Tranter D, Rehan S, Huiskonen J, Happonen L, Paavilainen V

PDB-8bf9:
Molecular view of ER membrane remodeling by the Sec61/TRAP translocon.
Method: single particle / : Karki S, Javanainen M, Tranter D, Rehan S, Huiskonen J, Happonen L, Paavilainen V

EMDB-40646:
CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3
Method: single particle / : Mishra AK, Shahid S, Karade SS, Mariuzza RA

EMDB-40716:
CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3 local refined
Method: single particle / : Mishra AK, Shahid S, Karade SS, Mariuzza RA

PDB-8so3:
CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3
Method: single particle / : Mishra AK, Shahid S, Karade SS, Mariuzza RA

PDB-8sr0:
CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3 local refined
Method: single particle / : Mishra AK, Shahid S, Karade SS, Mariuzza RA

EMDB-14776:
Signal peptide mimicry primes Sec61 for client-selective inhibition
Method: single particle / : Rehan S, Paavilainen O V

PDB-7zl3:
Signal peptide mimicry primes Sec61 for client-selective inhibition
Method: single particle / : Rehan S, Paavilainen O V

EMDB-15905:
Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
Method: single particle / : Koller TO, Graf M, Wilson DN

PDB-8b7y:
Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
Method: single particle / : Koller TO, Graf M, Wilson DN

EMDB-14121:
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Method: single particle / : Koller TO, Beckert B, Wilson DN

PDB-7qq3:
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Method: single particle / : Koller TO, Beckert B, Wilson DN

EMDB-14078:
human Lig1-DNA-PCNA complex reconstituted in absence of ATP
Method: single particle / : Blair K, Tehseen M, Raducanu VS, Shahid T, Lancey C, Cruehet R, Hamdan S, De Biasio A

EMDB-14080:
complex of DNA ligase I and FEN1 on PCNA and DNA
Method: single particle / : Blair K, Tehseen M, Raducanu VS, Shahid T, Lancey C, Cruehet R, Hamdan S, De Biasio A

EMDB-15385:
FEN1 holoenzyme with a nicked DNA substrate
Method: single particle / : Blair K, Tehseen M, Raducanu VS, Shahid T, Lancey C, Cruehet R, Hamdan S, De Biasio A

EMDB-15921:
Open conformation of the complex of DNA ligase I on PCNA and DNA in the presence of ATP
Method: single particle / : Blair K, Tehseen M, Raducanu VS, Shahid T, Lancey C, Cruehet R, Hamdan S, De Biasio A

PDB-7qnz:
human Lig1-DNA-PCNA complex reconstituted in absence of ATP
Method: single particle / : Blair K, Tehseen M, Raducanu VS, Shahid T, Lancey C, Cruehet R, Hamdan S, De Biasio A

PDB-7qo1:
complex of DNA ligase I and FEN1 on PCNA and DNA
Method: single particle / : Blair K, Tehseen M, Raducanu VS, Shahid T, Lancey C, Cruehet R, Hamdan S, De Biasio A

PDB-8b8t:
Open conformation of the complex of DNA ligase I on PCNA and DNA in the presence of ATP
Method: single particle / : Blair K, Tehseen M, Raducanu VS, Shahid T, Lancey C, Cruehet R, Hamdan S, De Biasio A

EMDB-13178:
Streptomyces coelicolor ATP-loaded NrdR
Method: single particle / : Martinez-Carranza M, Stenmark P

EMDB-13179:
Streptomyces coelicolor dATP/ATP-loaded NrdR in complex with its cognate DNA
Method: single particle / : Martinez-Carranza M, Stenmark P

EMDB-13182:
Streptomyces coelicolor dATP/ATP-loaded NrdR octamer
Method: single particle / : Martinez-Carranza M, Stenmark P

PDB-7p37:
Streptomyces coelicolor ATP-loaded NrdR
Method: single particle / : Martinez-Carranza M, Stenmark P

PDB-7p3f:
Streptomyces coelicolor dATP/ATP-loaded NrdR in complex with its cognate DNA
Method: single particle / : Martinez-Carranza M, Stenmark P

PDB-7p3q:
Streptomyces coelicolor dATP/ATP-loaded NrdR octamer
Method: single particle / : Martinez-Carranza M, Stenmark P

EMDB-12574:
Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA
Method: single particle / : Beckert B, Wilson DN

PDB-7nsp:
Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA
Method: single particle / : Beckert B, Wilson DN

EMDB-12573:
Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA
Method: single particle / : Beckert B, Wilson DN

EMDB-12575:
Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA
Method: single particle / : Beckert B, Wilson DN

PDB-7nso:
Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA
Method: single particle / : Beckert B, Wilson DN

PDB-7nsq:
Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA
Method: single particle / : Beckert B, Wilson DN

EMDB-12817:
Chaetomium thermophilum Chl1 Helicase
Method: single particle / : Hodakova Z, Singleton MR

EMDB-10266:
Homo sapiens WRB/CAML heterotetramer in complex with a TRC40 dimer
Method: single particle / : McDowell MA, Heimes M, Wild K, Flemming D, Sinning I

EMDB-11607:
Saccharomyces cerevisiae Get1/Get2 heterotetramer in complex with a Get3 dimer
Method: single particle / : McDowell MA, Pfeffer S, Flemming D, Sinning I

PDB-6so5:
Homo sapiens WRB/CAML heterotetramer in complex with a TRC40 dimer
Method: single particle / : McDowell MA, Heimes M, Wild K, Flemming D, Sinning I

EMDB-0270:
Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome
Method: single particle / : Wilson DN, Abdelshahid M

PDB-6htq:
Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome
Method: single particle / : Wilson DN, Abdelshahid M

EMDB-0176:
Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
Method: single particle / : Crowe-McAuliffe C, Graf M, Huter P, Abdelshahid M, Novacek J, Wilson DN

EMDB-0177:
Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome
Method: single particle / : Crowe-McAuliffe C, Graf M, Huter P, Abdelshahid M, Novacek J, Wilson DN

PDB-6ha1:
Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
Method: single particle / : Crowe-McAuliffe C, Graf M, Huter P, Abdelshahid M, Novacek J, Wilson DN

PDB-6ha8:
Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome
Method: single particle / : Crowe-McAuliffe C, Graf M, Huter P, Abdelshahid M, Novacek J, Wilson DN

EMDB-3656:
Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
Method: single particle / : Beckert B, Abdelshahid M, Schaefer H, Steinchen W, Arenz S, Berninghausen O, Beckmann R, Bange G, Turgay K, Wilson DN

PDB-5njt:
Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
Method: single particle / : Beckert B, Abdelshahid M, Schaefer H, Steinchen W, Arenz S, Berninghausen O, Beckmann R, Bange G, Turgay K, Wilson DN

EMDB-3664:
Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
Method: single particle / : Beckert B, Abdelshahid M, Schafer H, Steinchen W, Arenz S, Berninghausen O, Beckmann R, Bange G, Turgay K, Wilson DN

EMDB-4001:
Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex
Method: single particle / : Arenz S, Wilson DN

PDB-5l3p:
Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex
Method: single particle / : Arenz S, Wilson DN

EMDB-6551:
Cryo-EM structure of the magnesium channel CorA in the closed symmetric magnesium-bound state
Method: single particle / : Matthies D, Dalmas O, Borgnia MJ, Dominik PK, Merk A, Rao P, Reddy BG, Islam S, Bartesaghi A, Perozo E, Subramaniam S

EMDB-6552:
Cryo-EM structure of the magnesium channel CorA in the magnesium-free asymmetric open state I
Method: single particle / : Matthies D, Dalmas O, Borgnia MJ, Dominik PK, Merk A, Rao P, Reddy BG, Islam S, Bartesaghi A, Perozo E, Subramaniam S

EMDB-6553:
Cryo-EM structure of the magnesium channel CorA in the magnesium-free asymmetric open state II
Method: single particle / : Matthies D, Dalmas O, Borgnia MJ, Dominik PK, Merk A, Rao P, Reddy BG, Islam S, Bartesaghi A, Perozo E, Subramaniam S

PDB-3jcf:
Cryo-EM structure of the magnesium channel CorA in the closed symmetric magnesium-bound state
Method: single particle / : Matthies D, Perozo E, Subramaniam S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more