[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 224 items for (author: p. & zhu)

PDB-8xok:
Cryo-EM structure of human ABCC4
Method: single particle / : Zhang PF, Liu Z

PDB-8xol:
Cryo-EM structure of human ABCC4 with ANP bound in NBD1
Method: single particle / : Zhang PF, Liu Z

PDB-8xom:
Cryo-EM structure of human ABCC4 in complex with ANP-bound in NBD1 and METHOTREXATE
Method: single particle / : Zhang PF, Liu Z

PDB-8whs:
Spike Trimer of BA.2.86 in complex with one hACE2
Method: single particle / : Yue C, Liu P

PDB-8whu:
Spike Trimer of BA.2.86 in complex with two hACE2s
Method: single particle / : Yue C, Liu P

PDB-8whv:
Spike Trimer of BA.2.86 with three RBDs down
Method: single particle / : Yue C, Liu P

PDB-8whw:
Spike Trimer of BA.2.86 with single RBD up
Method: single particle / : Yue C, Liu P

PDB-8x4h:
SARS-CoV-2 JN.1 Spike
Method: single particle / : Yue C, Liu P

PDB-8x5q:
SARS-CoV-2 BA.2.75 Spike with K356T mutation (3 RBD down)
Method: single particle / : Yue C, Liu P

PDB-8x5r:
SARS-CoV-2 BA.2.75 Spike with K356T mutation (1 RBD up)
Method: single particle / : Yue C, Liu P

PDB-8xur:
BA.2.86 Spike Trimer in complex with heparan sulfate
Method: single particle / : Yue C, Liu P

PDB-8xus:
JN.1 Spike Trimer in complex with heparan sulfate
Method: single particle / : Yue C, Liu P

PDB-8xut:
XBB.1.5 Spike Trimer in complex with heparan sulfate
Method: single particle / : Yue C, Liu P, Mao X

PDB-8xuu:
BA.2.86-T356K Spike Trimer in complex with heparan sulfate (Local refinement)
Method: single particle / : Yue C, Liu P

PDB-8whz:
BA.2.86 RBD in complex with hACE2 (local refinement)
Method: single particle / : Yue C, Liu P

PDB-8x4z:
BA.2.86 Spike Trimer with ins483V mutation (3 RBD down)
Method: single particle / : Yue C, Liu P

PDB-8x50:
BA.2.86 Spike Trimer with ins483V mutation (1 RBD up)
Method: single particle / : Yue C, Liu P

PDB-8x55:
BA.2.86 Spike Trimer with T356K mutation (3 RBD down)
Method: single particle / : Yue C, Liu P

PDB-8x56:
BA.2.86 Spike Trimer with T356K mutation (1 RBD up)
Method: single particle / : Yue C, Liu P

PDB-8z9a:
Cryo-EM structure of the insect olfactory receptor OR5-Orco heterocomplex from Acyrthosiphon pisum bound with geranyl acetate
Method: single particle / : Wang YD, Qiu L, Guan ZY, Wang Q, Wang GR, Yin P

PDB-8z9z:
Cryo-EM structure of the insect olfactory receptor OR5-Orco heterocomplex from Acyrthosiphon pisum
Method: single particle / : Wang YD, Qiu L, Guan ZY, Wang Q, Wang GR, Yin P

PDB-8yut:
Cryo-EM structure of the amthamine-bound H2R-Gs complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8yuu:
Cryo-EM structure of the histamine-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8yuv:
Cryo-EM structure of the immepip-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8w5k:
Cryo-EM structure of the yeast TOM core complex crosslinked by BS3 (from TOM-TIM23 complex)
Method: single particle / : Wang Q, Guan ZY, Zhuang JJ, Huang R, Yin P

PDB-8w5j:
Cryo-EM structure of the yeast TOM core complex (from TOM-TIM23 complex)
Method: single particle / : Wang Q, Guan ZY, Zhuang JJ, Huang R, Yin P

PDB-8h93:
Structure of dimeric mouse SCMC core complex
Method: single particle / : Chi P, Ou G, Han Z, Li J, Deng D

PDB-8h94:
Structure of mouse SCMC bound with KH domain of FILIA
Method: single particle / : Chi P, Ou G, Han Z, Li J, Deng D

PDB-8h95:
Structure of mouse SCMC bound with full-length FILIA
Method: single particle / : Chi P, Ou G, Han Z, Li L, Deng D

PDB-8h96:
Structure of mouse SCMC core complex
Method: single particle / : Chi P, Ou G, Li J, Han Z, Deng D

PDB-8jgb:
CryoEM structure of Gi-coupled MRGPRX1 with peptide agonist CNF-Tx2
Method: single particle / : Sun JP, Xu HE, Yang F, Liu ZM, Guo LL, Zhang YM, Fang GX, Tie L, Zhuang YM, Xue CY

PDB-8jgf:
CryoEM structure of Gq-coupled MRGPRX1 with peptide agonist BAM8-22
Method: single particle / : Sun JP, Xu HE, Yang F, Liu ZM, Guo LL, Zhang YM, Fang GX, Tie L, Zhuang YM, Xue CY

PDB-8jgg:
CryoEM structure of Gi-coupled MRGPRX1 with peptide agonist BAM8-22
Method: single particle / : Sun JP, Xu HE, Ynag F, Liu ZM, Guo LL, Zhang YM, Fang GX, Tie L, Zhuang YM, Xue CY

PDB-8w8q:
Cryo-EM structure of the GPR101-Gs complex
Method: single particle / : Sun JP, Gao N, Yu X, Wang GP, Yang F, Wang JY, Yang Z, Guan Y

PDB-8w8r:
Cryo-EM structure of the AA-14-bound GPR101-Gs complex
Method: single particle / : Sun JP, Yu X, Gao N, Yang F, Wang JY, Yang Z, Guan Y, Wang GP

PDB-8w8s:
Cryo-EM structure of the AA14-bound GPR101 complex
Method: single particle / : Sun JP, Yu X, Gao N, Yang F, Wang JY, Yang Z, Guan Y, Wang GP

PDB-8wc3:
Cryo-EM structure of the SEP363856-bound mTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

PDB-8wc4:
Cryo-EM structure of the ZH8651-bound mTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

PDB-8wc5:
Cryo-EM structure of the TMA-bound mTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

PDB-8wc6:
Cryo-EM structure of the PEA-bound mTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

PDB-8wc7:
Cryo-EM structure of the ZH8667-bound mTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

PDB-8wc8:
Cryo-EM structure of the ZH8651-bound hTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

PDB-8wc9:
Cryo-EM structure of the ZH8651-bound mTAAR1-Gq complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

PDB-8wca:
Cryo-EM structure of the PEA-bound hTAAR1-Gs complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

PDB-8wcb:
Cryo-EM structure of the CHA-bound mTAAR1-Gq complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

PDB-8wcc:
Cryo-EM structure of the CHA-bound mTAAR1 complex
Method: single particle / : Rong NK, Guo LL, Zhang MH, Li Q, Yang F, Sun JP

PDB-7xkw:
The 3D strcuture of (-)-cyperene synthase with substrate analogue FSPP
Method: single particle / : Yu SS, Zhu P, Liu YB, Ma SG, Ye D, Shao YZ, Li WR, Cui ZJ

PDB-8i23:
Clostridium thermocellum RNA polymerase transcription open complex with SigI1 and its promoter
Method: single particle / : Li J, Zhang H, Li D, Feng Y, Zhu P

PDB-8i24:
Clostridium thermocellum RNA polymerase transcription open complex with SigI6 and its promoter
Method: single particle / : Li J, Zhang H, Li D, Feng Y, Zhu P

PDB-8ibw:
Structure of R2 with 3'UTR and DNA in binding state
Method: single particle / : Deng P, Tan S, Wang J, Liu JJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more