[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 97 items for (author: lindahl & m)

PDB-8swf:
Cryo-EM structure of NLRP3 open octamer
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

PDB-8swk:
Cryo-EM structure of NLRP3 closed hexamer
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

PDB-8sxn:
Structure of NLRP3 and NEK7 complex
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

EMDB-28209:
Apo rat TRPV2 in nanodiscs, state 1
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

EMDB-28210:
Apo rat TRPV2 in nanodiscs, state 2
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

EMDB-28211:
Apo rat TRPV2 in nanodiscs, state 3
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

EMDB-28212:
rat TRPV2 in nanodiscs in the presence of weak acid at pH 5
Method: single particle / : Pumroy RP, Moiseenkova-Bell VY

EMDB-40462:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus pregnenolone sulfate
Method: single particle / : Legesse DH, Fan C, Teng J, Zhuang Y, Howard RJ, Noviello CM, Lindahl E, Hibbs RE

EMDB-40503:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus allopregnanolone
Method: single particle / : Legesse DH, Hibbs RE

EMDB-40506:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus dehydroepiandrosterone sulfate
Method: single particle / : Legesse DH, Hibbs RE

PDB-8sgo:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus pregnenolone sulfate
Method: single particle / : Legesse DH, Fan C, Teng J, Zhuang Y, Howard RJ, Noviello CM, Lindahl E, Hibbs RE

PDB-8si9:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus allopregnanolone
Method: single particle / : Legesse DH, Hibbs RE

PDB-8sid:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus dehydroepiandrosterone sulfate
Method: single particle / : Legesse DH, Hibbs RE

EMDB-15903:
Automated simulation-based refinement of maltoporin into a cryo-EM density
Method: single particle / : Yvonnesdotter L, Rovsnik U, Blau C, Lycksell M, Howard RJ, Lindahl E

PDB-8b7v:
Automated simulation-based refinement of maltoporin into a cryo-EM density
Method: single particle / : Yvonnesdotter L, Rovsnik U, Blau C, Lycksell M, Howard RJ, Lindahl E

EMDB-13791:
Pentameric ligand-gated ion channel, DeCLIC at pH 7 with 10 mM Ca2+
Method: single particle / : Licksell M, Rovsnik U, Hanke A, Howard RJ, Lindahl E

EMDB-13792:
Pentameric ligand-gated ion channel, DeCLIC at pH 7 with 10 mM EDTA
Method: single particle / : Lycksell M, Rovsnik U, Hanke A, Howard RJ, Lindahl E

PDB-7q3g:
Pentameric ligand-gated ion channel, DeCLIC at pH 7 with 10 mM Ca2+
Method: single particle / : Licksell M, Rovsnik U, Hanke A, Howard RJ, Lindahl E

PDB-7q3h:
Pentameric ligand-gated ion channel, DeCLIC at pH 7 with 10 mM EDTA
Method: single particle / : Lycksell M, Rovsnik U, Hanke A, Howard RJ, Lindahl E

EMDB-12675:
GLIC, pentameric ligand gated ion channel, pH 3 State 2
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-12677:
GLIC, pentameric ligand-gated ion channel, pH 5, state 2
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-12678:
GLIC, pentameric ligand-gated ion channel, pH 7 state 2
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-11202:
GLIC pentameric ligand-gated ion channel, pH 7
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-11208:
GLIC pentameric ligand-gated ion channel, pH 5
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-11209:
GLIC pentameric ligand-gated ion channel, pH 3
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

PDB-6zgd:
GLIC pentameric ligand-gated ion channel, pH 7
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

PDB-6zgj:
GLIC pentameric ligand-gated ion channel, pH 5
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

PDB-6zgk:
GLIC pentameric ligand-gated ion channel, pH 3
Method: single particle / : Rovsnik U, Zhuang Y, Forsberg BO, Carroni M, Yvonnesdotter L, Howard RJ, Lindahl E

EMDB-11266:
E2 core of the fungal Pyruvate dehydrogenase complex with flexible/oversym. periphery, structured core and oversym. interior
Method: single particle / : Forsberg BO, Lindahl E, Aibara S, Howard RJ, Mortezaei N

EMDB-11267:
E2 core of the fungal Pyruvate dehydrogenase complex with flexible/oversym. periphery, structured core and S4X-structured interior.
Method: single particle / : Forsberg BO, Lindahl E, Aibara S, Howard RJ, Mortezaei N

EMDB-11268:
E2 core of the fungal Pyruvate dehydrogenase complex with flexible/oversym. periphery, structured core and S4Y-structured interior.
Method: single particle / : Forsberg BO, Aibara S, Howard RJ, Mortezaei N, Lindahl E

EMDB-11269:
E2 core of the fungal Pyruvate dehydrogenase complex with absent periphery, structured core and empty interior.
Method: single particle / : Forsberg BO, Lindahl E, Aibara S, Howard RJ, Mortezaei N

EMDB-11270:
E2 core of the fungal Pyruvate dehydrogenase complex with asymmetric interior PX30 component
Method: single particle / : Forsberg BO, Howard RJ, Aibara S, Mortesaei N, Lindahl E

EMDB-11271:
E2 core of the fungal Pyruvate dehydrogenase complex with asymmetric interior PX261 component
Method: single particle / : Forsberg BO, Lindahl E, Aibara S, Howard RJ, Mortezaei N

PDB-6zlm:
Dihydrolipoyllysine-residue acetyltransferase component of fungal pyruvate dehydrogenase complex with protein X bound
Method: single particle / : Forsberg BO, Aibara S, Howard RJ, Mortezaei N, Lindahl E

PDB-6zlo:
E2 core of the fungal Pyruvate dehydrogenase complex with asymmetric interior PX30 component
Method: single particle / : Forsberg BO, Howard RJ, Aibara S, Mortesaei N, Lindahl E

EMDB-22031:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with bicuculline methbromide
Method: single particle / : Kim JJ, Gharpure A, Teng J, Zhuang Y, Howard RJ, Zhu S, Noviello CM, Walsh RM, Lindahl E, Hibbs RE

EMDB-22032:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus propofol
Method: single particle / : Kim JJ, Gharpure A

EMDB-22033:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus flumazenil
Method: single particle / : Kim JJ, Gharpure A

EMDB-22034:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus etomidate
Method: single particle / : Kim JJ, Gharpure A

EMDB-22035:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus phenobarbital
Method: single particle / : Kim JJ, Gharpure A

EMDB-22036:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus diazepam
Method: single particle / : Kim JJ, Gharpure A

EMDB-22037:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA
Method: single particle / : Kim JJ, Gharpure A

EMDB-22038:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus picrotoxin
Method: single particle / : Kim JJ, Gharpure A

PDB-6x3s:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with bicuculline methbromide
Method: single particle / : Kim JJ, Gharpure A, Teng J, Zhuang Y, Howard RJ, Zhu S, Noviello CM, Walsh RM, Lindahl E, Hibbs RE

PDB-6x3t:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus propofol
Method: single particle / : Kim JJ, Gharpure A, Teng J, Zhuang Y, Howard RJ, Zhu S, Noviello CM, Walsh RM, Lindahl E, Hibbs RE

PDB-6x3u:
Human GABAA receptor alpha1-beta2-gamma2 subtype in complex with GABA plus flumazenil
Method: single particle / : Kim JJ, Gharpure A, Teng J, Zhuang Y, Howard RJ, Zhu S, Noviello CM, Walsh RM, Lindahl E, Hibbs RE

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more