[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 67 items for (author: josé & m & valpuesta)

EMDB-14727:
3D reconstruction of the cylindrical assembly of DnaJA2 by imposing D5 symmetry
Method: single particle / : Cuellar J, Velasco-Carneros L, Santiago C, Martin-Benito J, Valpuesta JM, Muga A

EMDB-14729:
3D reconstruction of the cylindrical assembly of DnaJA2 without symmetry imposition
Method: single particle / : Cuellar J, Velasco-Carneros L, Santiago C, Martin-Benito J, Valpuesta JM, Muga A

EMDB-14736:
3D reconstruction of the cylindrical assembly of DnaJA2 delta G/F by imposing D5 symmetry
Method: single particle / : Cuellar J, Velasco-Carneros L, Santiago C, Martin-Benito J, Valpuesta J, Muga A

PDB-7zhs:
3D reconstruction of the cylindrical assembly of DnaJA2 delta G/F by imposing D5 symmetry
Method: single particle / : Cuellar J, Velasco-Carneros L, Santiago C, Martin-Benito J, Valpuesta J, Muga A

EMDB-14706:
3D reconstruction of the cylindrical assembly of DnaJA2 delta G/F without symmetry imposition
Method: single particle / : Cuellar J, Velasco-Carneros L, Santiago C, Martin-Benito J, Muga A, Valpuesta JM

EMDB-13588:
Gelsolin-free CCT
Method: single particle / : Cuellar J, Vallin J, Svanstrom A, Maestro-Lopez M, Bueno-Carrasco MT, Ludlam WG, Willardson BM, Valpuesta JM, Grantham J

EMDB-13177:
Ser40 phosphorylated tyrosine hydroxylase
Method: single particle / : Bueno-Carrasco MT, Cuellar J

EMDB-13747:
CCT-gelsolin complex
Method: single particle / : Cuellar J, Vallin J, Svanstrom A, Maestro-Lopez M, Bueno-Carrasco MT, Ludlam WG, Willardson BM, Valpuesta JM, Grantham J

EMDB-13442:
Partial structure of tyrosine hydroxylase lacking the first 35 residues in complex with dopamine.
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

PDB-7pim:
Partial structure of tyrosine hydroxylase lacking the first 35 residues in complex with dopamine.
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

EMDB-11309:
Partial structure of tyrosine hydroxylase in complex with dopamine showing the catalytic domain and an alpha-helix from the regulatory domain involved in dopamine binding.
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

PDB-6zn2:
Partial structure of tyrosine hydroxylase in complex with dopamine showing the catalytic domain and an alpha-helix from the regulatory domain involved in dopamine binding.
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

EMDB-11624:
Full-length structure of the substrate-free tyrosine hydroxylase (apo-TH).
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Flydal MI, Martinez A, Valpuesta JM

PDB-7a2g:
Full-length structure of the substrate-free tyrosine hydroxylase (apo-TH).
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Flydal MI, Martinez A, Valpuesta JM

EMDB-11467:
Atomic model of the EM-based structure of the full-length tyrosine hydroxylase in complex with dopamine (residues 40-497) in which the regulatory domain (residues 40-165) has been included only with the backbone atoms
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

EMDB-11587:
Partial structure of the substrate-free tyrosine hydroxylase (apo-TH).
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

PDB-6zvp:
Atomic model of the EM-based structure of the full-length tyrosine hydroxylase in complex with dopamine (residues 40-497) in which the regulatory domain (residues 40-165) has been included only with the backbone atoms
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

PDB-6zzu:
Partial structure of the substrate-free tyrosine hydroxylase (apo-TH).
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

EMDB-10911:
Cryo-EM structure of T7 bacteriophage DNA translocation gp15 core protein intermediate assembly
Method: single particle / : Perez-Ruiz M, Pulido-Cid M, Luque-Ortega JR, Cuervo A, Carrascosa JL

EMDB-10912:
Cryo-EM structure of T7 bacteriophage DNA translocation gp15-gp16 core complex intermediate assembly
Method: single particle / : Perez-Ruiz M, Pulido-Cid M, Luque-Ortega JR, Cuervo A, Carrascosa JL

PDB-6ysz:
Cryo-EM structure of T7 bacteriophage DNA translocation gp15 core protein intermediate assembly
Method: single particle / : Perez-Ruiz M, Pulido-Cid M, Luque-Ortega JR, Cuervo A, Carrascosa JL

PDB-6yt5:
Cryo-EM structure of T7 bacteriophage DNA translocation gp15-gp16 core complex intermediate assembly
Method: single particle / : Perez-Ruiz M, Pulido-Cid M, Luque-Ortega JR, Cuervo A, Carrascosa JL

EMDB-4568:
Cryo-EM 3D structure of CI2eng toroidal dodecameric assembly.
Method: single particle / : Valpuesta JM, Alvira S, Campos LA, Munoz V

EMDB-0323:
Structural insights into the ability of nucleoplasmin to assemble and chaperone histone octamers for DNA deposition
Method: single particle / : Valpuesta JM, Arranz R, Martin-Benito J

EMDB-4489:
Human CCT:mLST8 complex
Method: single particle / : Cuellar J, Santiago C, Ludlam WG, Bueno-Carrasco MT, Valpuesta JM, Willardson BM

EMDB-4503:
Human substrate-free CCT
Method: single particle / : Cuellar J, Santiago C, Ludlam WG, Bueno-Carrasco MT, Valpuesta JM, Willardson BM

PDB-6qb8:
Human CCT:mLST8 complex
Method: single particle / : Cuellar J, Santiago C, Ludlam WG, Bueno-Carrasco MT, Valpuesta JM, Willardson BM

EMDB-4293:
Hsp70:p53-TMGST:CHIP
Method: single particle / : Quintana-Gallardo L, Martin-Benito J, Valpuesta JM

EMDB-4294:
Hsp90:p53-TMGST:CHIP
Method: single particle / : Quintana-Gallardo L, Martin-Benito J, Valpuesta JM

EMDB-3753:
Negative stain 3D single particle reconstruction of the isolated surface adhesin P140/P110 complex of Mycoplasma genitalium.
Method: single particle / : Scheffer MP

EMDB-3756:
Sub-tomogram average of the surface adhesin (NAP) complex from Mycoplasma genitalium cells by cryo-electron tomography.
Method: subtomogram averaging / : Scheffer MP, Gonzalez-Gonzalez L, Frangakis AS

EMDB-3442:
Cryo-EM reconstructions of clathrin D6 cages
Method: single particle / : Sousa R, Liao HS, Cuellar J, Valpuesta JM, Jin AJ, Lafer EM

EMDB-4035:
Cryo-EM reconstruction of clathrin D6 cages + full length Hsc70
Method: single particle / : Sousa R, Liao HS, Cuellar J, Valpuesta JM, Jin AJ, Lafer EM

EMDB-4036:
Cryo-EM reconstruction of clathrin D6 cages + Hsc70 Delta C
Method: single particle / : Sousa R, Liao HS, Cuellar J, Valpuesta JM, Jin AJ, Lafer EM

EMDB-2447:
Electron microscopy of the complex formed by chaperones TBCE and TBCB and alpha-tubulin
Method: single particle / : Serna M, Carranza G, Martin-Benito J, Janowsk R, Canals A, Coll M, Zabala JC, Valpuesta JM

EMDB-5713:
Electron microscopy of negatively-stained gp12 tubular protein of T7 bacteriophage
Method: single particle / : Cuervo A, Pulido-Cid M, Chagoyen M, Arranz R, Gonzalez-Garcia VA, Garcia-Doval C, Caston JR, Valpuesta JM, van Raaij MJ, Martin-Benito J, Carrascosa JL

EMDB-5689:
Cryo-electron microscopy of T7 tail complex
Method: single particle / : Cuervo A, Pulido-Cid M, Chagoyen M, Arranz R, Gonzalez-Garcia VA, Garcia-Doval C, Caston JR, Valpuesta JM, van Raaij MJ, Martin-Benito J, Carrascosa JL

EMDB-5690:
Cryo-electron microscopy of T7 tail complex formed by gp8, gp11, and gp12 proteins
Method: single particle / : Cuervo A, Pulido-Cid M, Chagoyen M, Arranz R, Gonzalez-Garcia VA, Garcia-Doval C, Caston JR, Valpuesta JM, van Raaij MJ, Martin-Benito J, Carrascosa JL

PDB-3j4a:
Structure of gp8 connector protein
Method: single particle / : Cuervo A, Pulido-Cid M, Chagoyen M, Arranz R, Gonzalez-Garcia VA, Garcia-Doval C, Caston JR, Valpuesta JM, van Raaij MJ, Martin-Benito J, Carrascosa JL

PDB-3j4b:
Structure of T7 gatekeeper protein (gp11)
Method: single particle / : Cuervo A, Pulido-Cid M, Chagoyen M, Arranz R, Gonzalez-Garcia VA, Garcia-Doval C, Caston JR, Valpuesta JM, van Raaij MJ, Martin-Benito J, Carrascosa JL

EMDB-2355:
Negative staining three dimensional reconstruction of bacteriophage T7 large terminase
Method: single particle / : Dauden MI, Martin-Benito J, Sanchez-Ferrero JC, Pulido-Cid M, Valpuesta JM, Carrascosa JL

EMDB-2356:
Negative staining three-dimensional reconstruction of bacteriophage T7 connector/terminase complex
Method: single particle / : Dauden MI, Martin-Benito J, Sanchez-Ferrero JC, Pulido-Cid M, Valpuesta JM, Carrascosa JL

PDB-4bij:
Threading model of T7 large terminase
Method: single particle / : Dauden MI, Martin-Benito J, Sanchez-Ferrero JC, Pulido-Cid M, Valpuesta JM, Carrascosa JL

PDB-4bil:
Threading model of the T7 large terminase within the gp8gp19 complex
Method: single particle / : Dauden MI, Martin-Benito J, Sanchez-Ferrero JC, Pulido-Cid M, Valpuesta JM, Carrascosa JL

EMDB-2332:
Structural insights into the chaperone activity of Hsp40: DnaJ binds and remodels RepE
Method: single particle / : Cuellar J, Perales-Calvo J, Muga A, Valpuesta JM, Moro F

EMDB-2333:
Structural insights into the chaperone activity of Hsp40: DnaJ binds and remodels RepE
Method: single particle / : Cuellar J, Perales-Calvo J, Muga A, Valpuesta JM, Moro F

EMDB-2334:
Structural insights into the chaperone activity of Hsp40: DnaJ binds and remodels RepE
Method: single particle / : Cuellar J, Perales-Calvo J, Muga A, Valpuesta JM, Moro F

EMDB-2205:
Cryo-electron microscopy reconstruction of the helical part of influenza A virus ribonucleoprotein isolated from virions.
Method: helical / : Arranz R, Coloma R, Chichon FJ, Conesa JJ, Carrascosa JL, Valpuesta JM, Ortin J, Martin-Benito J

EMDB-2206:
Negative stained electron microscopy reconstruction of the loop of influenza A virus ribonucleoprotein isolated from virions.
Method: single particle / : Arranz R, Coloma R, Chichon FJ, Conesa JJ, Carrascosa JL, Valpuesta JM, Ortin J, Martin-Benito J

EMDB-2207:
Negative stained electron microscopy reconstruction of the viral polymerase of influenza A virus ribonucleoprotein isolated from virions. Conformation 1.
Method: single particle / : Arranz R, Coloma R, Chichon FJ, Conesa JJ, Carrascosa JL, Valpuesta JM, Ortin J, Martin-Benito J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more