[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 139 items for (author: jakana & j)

EMDB-20159:
Rotavirus A-VP3-8mer ssRNA complex (RVA-VP3-RNA)
Method: single particle / : Kumar D, Yu X

EMDB-0338:
MS2 / F-pilus complex
Method: subtomogram averaging / : Hu B

EMDB-0448:
F-pilus/MS2 complex (Class 2 map with genome masked out)
Method: single particle / : Meng R, Jiang M, Zhang J

EMDB-0450:
F-pilus/MS2 complex (Class 3 map with genome masked out)
Method: single particle / : Meng R, Jiang M, Zhang J

EMDB-0451:
Enterobacteria phage MS2
Method: single particle / : Meng R, Cui Z, Zhang J

EMDB-0453:
F-pilus/MS2 complex (all particles map with genome masked out)
Method: single particle / : Meng R, Jiang M, Zhang J

EMDB-9397:
F-pilus/MS2 Maturation protein complex
Method: single particle / : Meng R, Jiang M, Zhang J

EMDB-9399:
F-pilus/MS2 complex (Class 1 map with genome masked out)
Method: single particle / : Meng R, Jiang M, Zhang J

PDB-6nm5:
F-pilus/MS2 Maturation protein complex
Method: single particle / : Meng R, Chang J, Zhang J

EMDB-0531:
AcrAB subcomplex - In situ structure and assembly of multidrug efflux pump AcrAB-TolC
Method: subtomogram averaging / : Chen M, Shi X, Ludtke SJ, Wang Z

EMDB-0532:
AcrAB-TolC close state - In situ structure and assembly of multidrug efflux pump AcrAB-TolC
Method: subtomogram averaging / : Chen M, Shi X, Ludtke SJ, Wang Z

EMDB-0533:
AcrAB-TolC open state - In situ structure and assembly of multidrug efflux pump AcrAB-TolC
Method: subtomogram averaging / : Chen M, Shi X, Ludtke SJ, Wang Z

EMDB-20091:
Singapore Grouper Iridovirus (SGIV) at 8.6 Angstrom Resolution
Method: single particle / : Pintilie G, Chen DH

PDB-6ojn:
Comparative Model of SGIV Major Coat Protein (MCP) Trimer Based on Cryo-EM Map
Method: single particle / : Pintilie G, Chen DH, Tran BN, Jakana J, Wu J, Hew CL, Chiu W

EMDB-8897:
apo state full-length C.diff toxinB
Method: single particle / : Zhang J, Jiang M

EMDB-8898:
Clostridioides difficileC toxinB with DLD-4 darpin
Method: single particle / : Zhang J, Jiang M

PDB-6ar6:
Clostridioides difficile toxinB with DLD-4 darpin
Method: single particle / : Zhang J, Jiang M

EMDB-8708:
Phage Qbeta with icosahedral symmetry
Method: single particle / : Cui Z, Zhang J

EMDB-8709:
Phage Qbeta with C1 symmetry
Method: single particle / : Cui Z, Zhang J

EMDB-8710:
A2 with sequestered coat dimer protein and interacting RNAs
Method: single particle / : Cui Z, Zhang J

EMDB-8711:
Phage Qbeta in complex with MurA
Method: single particle / : Cui Z, Zhang J

PDB-5vly:
Asymmetric unit for the coat proteins of phage Qbeta
Method: single particle / : Cui Z, Zhang J

PDB-5vlz:
Backbone model for phage Qbeta capsid
Method: single particle / : Cui Z, Zhang J

PDB-5vm7:
Pseudo-atomic model of the MurA-A2 complex
Method: single particle / : Cui Z, Zhang J

EMDB-8641:
Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis
Method: single particle / : Yang K, Chang JY, Cui Z, Zhang J

EMDB-8645:
Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
Method: single particle / : Yang K, Chang JY, Cui Z, Li X, Meng R, Duan L, Thongchol J, Jakana J, Huwe C, Sacchettini J, Zhang J

EMDB-8646:
Locally-refined cryo-EM structure of the small ribosomal subunit from Mycobacterium tuberculosis
Method: single particle / : Yang K, Chang JY, Cui Z, Zhang J

EMDB-8647:
Cryo-EM structure of the 70S ribosome from Mycobacterium smegmatis
Method: single particle / : Yang K, Chang JY, Cui Z, Zhang J

EMDB-8648:
Focused classification of the 70S ribosome from Mycobacterium tuberculosis
Method: single particle / : Yang K, Chang JY, Cui Z, Zhang J

EMDB-8649:
Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis at 1 mM magnesium concentration
Method: single particle / : Yang K, Chang JY, Cui Z, Zhang J

PDB-5v7q:
Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
Method: single particle / : Yang K, Chang JY, Cui Z, Zhang J

PDB-5v93:
Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
Method: single particle / : Yang K, Chang JY, Cui Z, Li X, Meng R, Duan L, Thongchol J, Jakana J, Huwe C, Sacchettini J, Zhang J

EMDB-8750:
GroEL using cryoEM
Method: single particle / : Roh SH, Chiu W

PDB-5w0s:
GroEL using cryoEM
Method: single particle / : Roh SH, Chiu W

EMDB-8707:
Negative stain reconstruction of Endoplasmic Reticulum HSP40 co-chaperone native ERdj3 tetramer.
Method: single particle / : Chowdhury S, Lander GC, Chen KC, Qu S, Noxon IC, Schonhoft JD, Plate L, Powers ET, Kelly JW, Wiseman RL

EMDB-8606:
Bacteriophage P22 mature virion capsid protein
Method: single particle / : Hryc CF, Chen DH

PDB-5uu5:
Bacteriophage P22 mature virion capsid protein
Method: single particle / : Hryc CF, Chen DH, Afonine PV, Jakana J, Wang Z, Haase-Pettingell C, Jiang W, Adams PD, King JA, Schmid MF, Chiu W

EMDB-8253:
Phage Qbeta with icosahedral symmetry
Method: single particle / : Gorzelnik KV, Cui Z, Zhang J

EMDB-8254:
Phage Qbeta asymmetric reconstruction
Method: single particle / : Gorzelnik KV, Cui Z, Zhang J

EMDB-8255:
Phage Qbeta capsid asymmetric reconstruction
Method: single particle / : Gorzelnik KV, Cui Z, Zhang J

PDB-5kip:
Asymmetric unit for the coat proteins of phage Qbeta
Method: single particle / : Gorzelnik KV, Cui Z, Zhang J

EMDB-8173:
CryoET of MEF Cells and Associated Manual Segmentation of Microtubule and Actin
Method: electron tomography / : Hecksel CW, Darrow MC, Dai W, Galaz-Montoya JG, Chin JA, Mitchell PG, Chen S, Jakana J, Schmid MF, Chiu W

EMDB-8174:
CryoET of U2OS Cells and Associated Manual Segmentation of Mitochondria
Method: electron tomography / : Hecksel CW, Darrow MC, Dai W, Galaz-Montoya JG, Chin JA, Mitchell PG, Chen S, Jakana J, Schmid MF, Chiu W

EMDB-5984:
CryoEM of Bacteriophage PRD1 wild-type
Method: single particle / : Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W

EMDB-5985:
CryoEM of Bacteriophage PRD1 procapsid
Method: single particle / : Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W

EMDB-5986:
CryoEM of Bacteriophage PRD1 Sus621 Mutant
Method: single particle / : Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W

EMDB-5987:
CryoEM of Bacteriophage PRD1 Sus526 Mutant
Method: single particle / : Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W

EMDB-5988:
CryoEM of Bacteriophage PRD1 Sus42 Mutant
Method: single particle / : Hong C, Oksanen HM, Liu X, Jakana J, Bamford DH, Chiu W

EMDB-6001:
Fako virus capsid: a newly-isolated reovirus has the simplest genomic and structural organization of any reovirus
Method: single particle / : Auguste AJ, Kaelber JT, Fokam EB, Guzman H, Carrington CVF, Erasmus JH, Kamgang B, Popov VL, Jakana J, Liu X, Wood TG, Widen SG, Vasilakis N, Tesh RB, Chiu W, Weaver SC

EMDB-6002:
Fako virus virion: a newly-isolated reovirus has the simplest genomic and structural organization of any reovirus
Method: single particle / : Auguste AJ, Kaelber JT, Fokam EB, Guzman H, Carrington CVF, Erasmus JH, Kamgang B, Popov VL, Jakana J, Liu X, Wood TG, Widen SG, Vasilakis N, Tesh RB, Chiu W, Weaver SC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more