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Showing all 29 items for (author: ehrenberg, & m.)
PDB-7ur5:
allo-tRNAUTu1 in the A, P, and E sites of the E. coli ribosome
Method: single particle / : Zhang J, Krahn N, Prabhakar A, Vargas-Rodriguez O, Krupkin M, Fu Z, Acosta-Reyes FJ, Ge X, Choi J, Crnkovic A, Ehrenberg M, Viani Puglisi E, Soll D, Puglisi J
PDB-7uri:
allo-tRNAUTu1A in the A site of the E. coli ribosome
Method: single particle / : Zhang J, Prabhakar A, Krahn N, Vargas-Rodriguez O, Krupkin M, Fu Z, Acosta-Reyes FJ, Ge X, Choi J, Crnkovic A, Ehrenberg M, Viani Puglisi E, Soll D, Puglisi J
PDB-7urm:
allo-tRNAUTu1A in the P site of the E. coli ribosome
Method: single particle / : Zhang J, Prabhakar A, Krahn N, Vargas-Rodriguez O, Krupkin M, Fu Z, Acosta-Reyes FJ, Ge X, Choi J, Crnkovic A, Ehrenberg M, Viani Puglisi E, Soll D, Puglisi J
PDB-6osk:
RF1 accommodated 70S complex at 60 ms
Method: single particle / : Fu Z, Indrisiunaite G, Kaledhonkar S, Shah B, Sun M, Chen B, Grassucci RA, Ehrenberg M, Frank J
PDB-6osq:
RF1 accommodated state bound Release complex 70S at long incubation time point
Method: single particle / : Fu Z, Indrisiunaite G, Kaledhonkar S, Shah B, Sun M, Chen B, Grassucci RA, Ehrenberg M, Frank J
PDB-6orl:
RF1 pre-accommodated 70S complex at 24 ms
Method: single particle / : Fu Z, Indrisiunaite G, Kaledhonkar S, Shah B, Sun M, Chen B, Grassucci RA, Ehrenberg M, Frank J
PDB-6ost:
RF2 pre-accommodated state bound Release complex 70S at 24ms
Method: single particle / : Fu Z, Indrisiunaite G, Kaledhonkar S, Shah B, Sun M, Chen B, Grassucci RA, Ehrenberg M, Frank J
PDB-6ot3:
RF2 accommodated state bound Release complex 70S at 24 ms
Method: single particle / : Fu Z, Indrisiunaite G, Kaledhonkar S, Shah B, Sun M, Chen B, Grassucci RA, Ehrenberg M, Frank J
PDB-6ouo:
RF2 accommodated state bound 70S complex at long incubation time
Method: single particle / : Fu Z, Indrisiunaite G, Kaledhonkar S, Shah B, Sun M, Chen B, Grassucci RA, Ehrenberg M, Frank J
PDB-4v69:
Ternary complex-bound E.coli 70S ribosome.
Method: single particle / : Villa E, Sengupta J, Trabuco LG, LeBarron J, Baxter WT, Shaikh TR, Grassucci RA, Nissen P, Ehrenberg M, Schulten K, Frank J
PDB-2rdo:
50S subunit with EF-G(GDPNP) and RRF bound
Method: single particle / : Gao N, Zavialov AV, Ehrenberg M, Frank J
PDB-2o0f:
Docking of the modified RF3 X-ray structure into cryo-EM map of E.coli 70S ribosome bound with RF3
Method: single particle / : Gao H, Zhou Z, Rawat U, Huang C, Bouakaz L, Wang C, Liu Y, Zavialov A, Gursky R, Sanyal S, Ehrenberg M, Frank J, Song H
PDB-2fvo:
Docking of the modified RF1 X-ray structure into the Low Resolution Cryo-EM map of E.coli 70S Ribosome bound with RF1
Method: single particle / : Rawat U, Gao H, Zavialov A, Gursky R, Ehrenberg M, Frank J
PDB-1zn0:
Coordinates of RRF and EF-G fitted into Cryo-EM map of the 50S subunit bound with both EF-G (GDPNP) and RRF
Method: single particle / : Gao N, Zavialov AV, Li W, Sengupta J, Valle M, Gursky RP, Ehrenberg M, Frank J
PDB-1zn1:
Coordinates of RRF fitted into Cryo-EM map of the 70S post-termination complex
Method: single particle / : Gao N, Zavialov AV, Li W, Sengupta J, Valle M, Gursky RP, Ehrenberg M, Frank J
PDB-1zo1:
IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex
Method: single particle / : Allen GS, Zavialov A, Gursky R, Ehrenberg M, Frank J
PDB-1zo3:
The P-site and P/E-site tRNA structures fitted to P/I site codon.
Method: single particle / : Allen GS, Zavialov A, Gursky R, Ehrenberg M, Frank J
PDB-1qza:
Coordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome
Method: single particle / : Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J
PDB-1qzb:
Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational state
Method: single particle / : Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J
PDB-1qzc:
Coordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome
Method: single particle / : Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J
PDB-1qzd:
EF-Tu.kirromycin coordinates fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome
Method: single particle / : Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J
PDB-1r2w:
Coordinates of L11 with 58nts of 23S rRNA fitted into the cryo-EM map of the 70S ribosome
Method: single particle / : Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J
PDB-1r2x:
Coordinates of L11 with 58nts of 23S rRNA fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome
Method: single particle / : Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J
PDB-1pn6:
Domain-wise fitting of the crystal structure of T.thermophilus EF-G into the low resolution map of the release complex.Puromycin.EFG.GDPNP of E.coli 70S ribosome.
Method: single particle / : Valle M, Zavialov A, Sengupta J, Rawat U, Ehrenberg M, Frank J
PDB-1pn7:
Coordinates of S12, L11 proteins and P-tRNA, from the 70S X-ray structure aligned to the 70S Cryo-EM map of E.coli ribosome
Method: single particle / : Valle M, Zavialov A, Sengupta J, Rawat U, Ehrenberg M, Frank J
PDB-1pn8:
Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.
Method: single particle / : Valle M, Zavialov A, Sengupta J, Rawat U, Ehrenberg M, Frank J
PDB-1mvr:
Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome
Method: single particle / : Rawat UB, Zavialov AV, Sengupta J, Valle M, Grassucci RA, Linde J, Vestergaard B, Ehrenberg M, Frank J
PDB-1ml5:
Structure of the E. coli ribosomal termination complex with release factor 2
Method: single particle / : Klaholz BP, Pape T, Zavialov AV, Myasnikov AG, Orlova EV, Vestergaard B, Ehrenberg M, van Heel M
PDB-1mi6:
Docking of the modified RF2 X-ray structure into the Low Resolution Cryo-EM map of RF2 E.coli 70S Ribosome
Method: single particle / : Rawat UBS, Zavialov AV, Sengupta J, Valle M, Grassucci RA, Linde J, Vestergaard B, Ehrenberg M, Frank J