[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 58 items for (author: dick & ms)

EMDB-41907:
Computationally Designed, Expandable O4 Octahedral Handshake Nanocage
Method: single particle / : Weidle C, Borst A

EMDB-42031:
Computational Designed Nanocage O43_129_+8
Method: single particle / : Weidle C, Kibler RD

EMDB-43318:
Twistless helix 12 repeat ring design R12B
Method: single particle / : Calise SJ, Kollman JM

EMDB-29974:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-41364:
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Method: single particle / : Weidle C, Borst AJ

EMDB-42906:
Computational Designed Nanocage O43_129
Method: single particle / : Weidle C, Kibler RD

EMDB-42944:
Computational Designed Nanocage O43_129_+4
Method: single particle / : Carr KD, Weidle C, Borst AJ

EMDB-41986:
Human retinal variant phosphomimetic IMPDH1(595)-S477D free octamer bound by GTP, ATP, IMP, and NAD+
Method: single particle / : Calise SJ, Kollman JM

EMDB-41989:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, octamer-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-42012:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, interface-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-42026:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, octamer-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-42029:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, interface-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-28752:
Cryo-electron tomography of wild type a-synuclein preformed fibrils
Method: electron tomography / : Jiang J, Boparai N, Dai W, Kim YS

EMDB-28753:
Cryo-electron tomography of S42Y a-synuclein preformed fibrils
Method: electron tomography / : Jiang J, Boparai N, Dai W, Kim YS

EMDB-29915:
CryoEM map of a de novo designed octahedral nanocage with programmable volume; design cage_O4_34
Method: single particle / : Kibler RD, Borst AJ

EMDB-40070:
Cryo-EM map of synthetic cage_O3_10 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Hsia Y, Huddy TF, Baker D, Ekiert D, Bhabha G

EMDB-40071:
Cryo-EM map of synthetic cage_O3_10 reconstructed with O symmetry
Method: single particle / : Coudray N, Redler R, Hsia Y, Huddy TF, Baker D, Ekiert D, Bhabha G

EMDB-40073:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1), with 1 monomer missing (class 3.0)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40074:
Cryo-EM map of synthetic cage_T3_5 reconstructed with T symmetry
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40075:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40076:
Cryo-EM map of synthetic cage_T3_5+2 reconstructed without symmetry (C1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-40072:
Cryo-EM map of synthetic cage_T3_5 reconstructed without symmetry (C1), with 1 trimer missing (class 3.1)
Method: single particle / : Coudray N, Redler R, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-26574:
KS-AT di-domain of mycobacterial Pks13 with endogenous KS ligand bound
Method: single particle / : Kim SK, Dickinson MS, Finer-Moore JS, Rosenberg OS, Stroud RM

EMDB-27002:
ACP1-KS-AT domains of mycobacterial Pks13
Method: single particle / : Kim SK, Dickinson MS, Finer-Moore JS, Rosenberg OS, Stroud RM

EMDB-27003:
KS-AT domains of mycobacterial Pks13 with inward AT conformation
Method: single particle / : Kim SK, Dickinson MS, Finer-Moore JS, Rosenberg OS, Stroud RM

EMDB-27004:
KS-AT domains of mycobacterial Pks13 with outward AT conformation
Method: single particle / : Kim SK, Dickinson MS, Finer-Moore JS, Rosenberg OS, Stroud RM

EMDB-27005:
ACP1-KS-AT domains of mycobacterial Pks13
Method: single particle / : Kim SK, Dickinson MS, Finer-Moore JS, Rosenberg OS, Stroud RM

EMDB-25825:
AtTPC1 D454N-EDTA state II
Method: single particle / : Dickinson MS, Stroud RM

EMDB-25826:
AtTPC1 DDE mutant with 1 mM Ca2+
Method: single particle / : Dickinson MS, Stroud RM

EMDB-26663:
Tau Paired Helical Filament from Alzheimer's Disease not incubated with EGCG
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

EMDB-26664:
Tau Paired Helical Filament from Alzheimer's Disease incubated 1 hr. with EGCG
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

EMDB-26665:
Tau Paired Helical Filament from Alzheimer's Disease incubated with EGCG for 3 hours
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

PDB-7upe:
Tau Paired Helical Filament from Alzheimer's Disease not incubated with EGCG
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

PDB-7upf:
Tau Paired Helical Filament from Alzheimer's Disease incubated 1 hr. with EGCG
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

PDB-7upg:
Tau Paired Helical Filament from Alzheimer's Disease incubated with EGCG for 3 hours
Method: helical / : Seidler PM, Murray KA, Boyer DR, Ge P, Sawaya MR, Eisenberg DS

EMDB-26839:
KSQ+AT from first module of the pikromycin synthase
Method: single particle / : Keatinge-Clay AT, Dickinson MS, Miyazawa T, McCool RS

EMDB-27094:
AT from first module of the pikromycin synthase
Method: single particle / : Keatinge-Clay AT, Dickinson MS, Miyazawa T, McCool RS

EMDB-25798:
AtTPC1 D454N with 1 mM Ca2+
Method: single particle / : Dickinson MS, Stroud RM

EMDB-25827:
AtTPC1 D454N with 1 mM EDTA state I
Method: single particle / : Dickinson MS, Stroud RM

EMDB-25691:
AKT1 K+ channel from A. thaliana in MSP2N2 lipid nanodisc
Method: single particle / : Dickinson MS, Pourmal S

EMDB-22829:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

PDB-7kdt:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

PDB-6vi3:
Straight Filament from Alzheimer's Disease Human Brain Tissue
Method: helical / : Arakhamia T, Lee CE, Carlomagno Y, Duong DM, Kundinger SR, Wang K, Williams D, DeTure M, Dickson DW, Cook CN, Seyfried NT, Petrucelli L, Fitzpatrick AWP

EMDB-21200:
Doublet Tau Fibril from Corticobasal Degeneration Human Brain Tissue
Method: helical / : Arakhamia T, Lee CE

EMDB-21201:
Singlet Tau Fibril from Corticobasal Degeneration Human Brain Tissue
Method: helical / : Arakhamia T, Lee CE

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more