[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 28 items for (author: das & sr)

EMDB-27112:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (global refinement)
Method: single particle / : Ozorowski G, Torres JL, Turner HL, Ward AB

EMDB-27113:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Method: single particle / : Ozorowski G, Torres JL, Ward AB

PDB-8d0z:
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Method: single particle / : Ozorowski G, Torres JL, Ward AB

EMDB-26313:
C6-guano bound Mu Opioid Receptor-Gi Protein Complex
Method: single particle / : Wang H, Kobilka B

PDB-7u2k:
C6-guano bound Mu Opioid Receptor-Gi Protein Complex
Method: single particle / : Wang H, Kobilka B

EMDB-26314:
C5guano-uOR-Gi-scFv16
Method: single particle / : Wang H, Qu Q, Skiniotis G, Kobilka B

PDB-7u2l:
C5guano-uOR-Gi-scFv16
Method: single particle / : Wang H, Qu Q, Skiniotis G, Kobilka B

EMDB-22265:
Cryo-EM structure of BCL6 bound to BI-3802
Method: single particle / : Yoon H, Burman SSR

EMDB-20628:
Volume 1 for truncated dimeric Cytohesin-3 (Grp1; amino acids 14-399)
Method: single particle / : Das S, Lambright DG

EMDB-20629:
Best fitting antiparallel model for Volume 2 of truncated dimeric Cytohesin-3 (Grp1; amino acids 14-399)
Method: single particle / : Das S, Lambright DG

PDB-6u3e:
Best fitting antiparallel model for Volume 1 of truncated dimeric Cytohesin-3 (Grp1; amino acids 14-399)
Method: single particle / : Das S, Lambright DG

PDB-6u3g:
Best fitting antiparallel model for Volume 2 of truncated dimeric Cytohesin-3 (Grp1; amino acids 14-399)
Method: single particle / : Das S, Lambright DG

EMDB-9030:
HIV-1 Envelope Glycoprotein Clone B41_delCT in complex with the broadly neutralizing antibody Fab PGT151
Method: single particle / : Berndsen ZT, Ward AB

EMDB-9062:
HIV-1 Envelope Glycoprotein Clone BG505 delCT N332T in complex with broadly neutralizing antibody Fab PGT151
Method: single particle / : Berndsen ZT, Ward AB

EMDB-4230:
Single particle cryo em structure of Mycobacterium tuberculosis RNA polymerase in complex with Fidaxomicin
Method: single particle / : Das K

PDB-6fbv:
Single particle cryo em structure of Mycobacterium tuberculosis RNA polymerase in complex with Fidaxomicin
Method: single particle / : Das K, Lin W, Ebright E

EMDB-7077:
Model for compact volume of truncated monomeric Cytohesin-3 (Grp1; amino acids 63-399) E161A 6GS Arf6 Q67L fusion protein
Method: single particle / : Das S, Malaby AW

EMDB-7078:
Model for extended volume of truncated monomeric Cytohesin-3 (Grp1; amino acids 63-399) E161A Arf6 Q67L fusion protein
Method: single particle / : Das S, Malaby AW

PDB-6bbp:
Model for compact volume of truncated monomeric Cytohesin-3 (Grp1; amino acids 63-399) E161A 6GS Arf6 Q67L fusion protein
Method: single particle / : Das S, Malaby AW, Lambright DG

PDB-6bbq:
Model for extended volume of truncated monomeric Cytohesin-3 (Grp1; amino acids 63-399) E161A Arf6 Q67L fusion protein
Method: single particle / : Das S, Malaby AW, Lambright DG

EMDB-5682:
Molecular structure of the native influenza hemagglutinin H1 on virions
Method: subtomogram averaging / : Harris AK, Meyerson JR, Matsuoka Y, Kuybeda O, Moran A, Bliss D, Das SR, Yewdell JW, Sapiro G, Subbarao K, Subramaniam S

EMDB-5683:
Molecular structure of the native influenza hemagglutinin H1 on virions
Method: subtomogram averaging / : Harris AK, Meyerson JR, Matsuoka Y, Kuybeda O, Moran A, Bliss D, Das SR, Yewdell JW, Sapiro G, Subbarao K, Subramaniam S

EMDB-5684:
Molecular structure of the native influenza hemagglutinin H1 on virions complexed with broadly neutralizing stem antibody C179
Method: subtomogram averaging / : Harris AK, Meyerson JR, Matsuoka Y, Kuybeda O, Moran A, Bliss D, Das SR, Yewdell JW, Sapiro G, Subbarao K, Subramaniam S

EMDB-5685:
Molecular structure of the native influenza hemagglutinin H1 on virions complexed with broadly neutralizing stem antibody C179
Method: subtomogram averaging / : Harris AK, Meyerson JR, Matsuoka Y, Kuybeda O, Moran A, Bliss D, Das SR, Yewdell JW, Sapiro G, Subbarao K, Subramaniam S

EMDB-5686:
Molecular structure of the native influenza hemagglutinin H3 on virions
Method: subtomogram averaging / : Harris AK, Meyerson JR, Matsuoka Y, Kuybeda O, Moran A, Bliss D, Das SR, Yewdell JW, Sapiro G, Subbarao K, Subramaniam S

EMDB-5687:
Molecular structure of the native influenza hemagglutinin H3 on virions
Method: subtomogram averaging / : Harris AK, Meyerson JR, Matsuoka Y, Kuybeda O, Moran A, Bliss D, Das SR, Yewdell JW, Sapiro G, Subbarao K, Subramaniam S

EMDB-2068:
Alp12 filament structure
Method: helical / : Popp D, Narita A, Lee LJ, Ghoshdastider U, Xue B, Srinivasan R, Balasubramanian MK, Tanaka T, Robinson RC

PDB-4apw:
Alp12 filament structure
Method: single particle / : Popp D, Narita A, Lee LJ, Ghoshdastider U, Xue B, Srinivasan R, Balasubramanian MK, Tanaka T, Robinson RC

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more