 Entry |
| Summary |
| Database / ID | EM DATA BANK (EMDB) / 1482 |
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| Title | structrue of truncated portal(portal602) complex with gp4 from bacteriophage P22
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| Map | map of portal602 complex with gp4 |
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| Sample | truncated portal complex with gp4 from bacteriophage P22 |
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| Authors | Zheng H, Olia AS, Gonen M, Andrews S, Cingolani G, Gonen T |
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| Date | Deposition: 2008-02-26, Header release: 2008-02-26, Map release: 2009-03-31, Last update: 2012-10-24 |
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| EMDB Sites |  EMDB @PDBe (EU), EMDB @RCSB (USA) |
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| Structure Visualization |
| Movies |  Movie Page
#1: Surface view with section colored by density value, Surface level: 3.850629391, Made by UCSF CHIMERA #2: Surface view colored by cylindrical radius, Surface level: 3.850629391, Made by UCSF CHIMERA |
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| Supplemental images |
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| Structure viewers |  Yorodumi,  Launch PeppeR (About PeppeR), Volume viewer (RCSB, PDBe) |
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| Related Structure Data |
| Related Entries |
Cite: data citing same article |
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| Similar strucutres (beta) |
 List of similar structure data  about Omokage system |
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 Article |
| Citation - Primary |
| Article | Mol. Cell, Vol. 29, Issue 3, Page 376-83, Year 2008 |
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| Title | A conformational switch in bacteriophage p22 portal protein primes genome injection. |
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| Authors | Hongjin Zheng, Adam S Olia, Melissa Gonen, Simeon Andrews, Gino Cingolani, Tamir Gonen
Department of Biochemistry, University of Washington, 1705 NE Pacific Street, Seattle, WA 98195, USA. |
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| Keywords |  Bacteriophage P22 (chemistry), Binding Sites, Capsid Proteins (chemistry), DNA, Viral (chemistry), Genome, Models, Molecular, Protein Binding, Protein Conformation, Viral Tail Proteins (chemistry), portal protein, bacteriophage P22 |
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| Links | PII: S1097-2765(08)00006-3, DOI: 10.1016/j.molcel.2007.11.034, PubMed: 18280242 |
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 Map |
| File |  EMD-1482.map ( map file in CCP4 format, 6914 KB ) |
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| Projections & Slices | Size of images: | Axes |  Z (Sec.) |  Y (Row.) |  X (Col.) |
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| Surface |  |  |  |
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Projections |  |  |  |
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Slices (1/3) |  |  |  |
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Slices (1/2) |  |  |  |
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Slices (2/3) |  |  |  |
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Images are generated by Spider package. |
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| Density |
| Contour Level: | 2.75, 3.8506294 (movie #1): |
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| Minimum - Maximum: | -2.59705 - 7.69801 |
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| Average (Standard dev.): | -7.13014e-09 (1) |
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| Data Type | Image stored as Reals |
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| Space Group Number | 1 |
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| Map Geometry | | Axis Order : | X | Y | Z |
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| Dimensions : | 120 | 120 | 120 |
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| Origin : | -60 | -60 | -60 |
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| Limit : | 59 | 59 | 59 |
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| Spacing : | 120 | 120 | 120 |
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| Unit Cell | A = 297.6 A , B = 297.6 A , C = 297.6 A ,
alpha = 90 degrees , beta = 90 degrees , gamma = 90 degrees |
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| Pixel Spacing | X = 2.48 A , Y = 2.48 A , Z = 2.48 A |
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| CCP4 map header info | | mode | Image stored as Reals |
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| A/pix X/Y/Z | 2.48 | 2.48 | 2.48 |
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| M x/y/z | 120 | 120 | 120 |
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| origin x/y/z | 0.000 | 0.000 | 0.000 |
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| length x/y/z | 297.600 | 297.600 | 297.600 |
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| alpha/beta/gamma | 90.000 | 90.000 | 90.000 |
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| start NX/NY/NZ | -64 | -64 | -64 |
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| NX/NY/NZ | 128 | 128 | 128 |
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| MAP C/R/S | 1 | 2 | 3 |
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| start NC/NR/NS | -60 | -60 | -60 |
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| NC/NR/NS | 120 | 120 | 120 |
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| start NC,NX/NR,NY/NS,NZ | | | |
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| NC,NX/NR,NY/NS,NZ | | | |
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| D min/max/mean | -2.597 | 7.698 | -0.000 |
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| Annotation Details | map of portal602 complex with gp4 |
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1482.gif (26.5 KB)
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