 Entry |
| Summary |
| Database / ID | EM DATA BANK (EMDB) / 1843 |
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| Authors | Schreiber A, Stengel F, Zhang Z, Enchev RE, Kong E, Morris EP, Robinson CV, daFonseca PCA, Barford D |
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| EMDB Sites |  EMDB @PDBe (EU), EMDB @RCSB (USA) |
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| Structure Visualization |
| Movies |  Movie Page
#1: Surface view with section colored by density value, Surface level: 52, Made by UCSF CHIMERA #2: Surface view colored by radius, Surface level: 52, Made by UCSF CHIMERA |
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| Supplemental images |
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| Structure viewers |  Yorodumi,  Launch PeppeR (About PeppeR), Volume viewer (RCSB, PDBe) |
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| Related Structure Data |
| Related Entries |
Cite: data citing same article |
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| Similar strucutres (beta) |
 List of similar structure data  about Omokage system |
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 Article |
| Citation - Primary |
| Article | Nature, Vol. 470, Issue 7333, Page 227-32, Year 2011 |
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| Title | Structural basis for the subunit assembly of the anaphase-promoting complex. |
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| Authors | Anne Schreiber, Florian Stengel, Ziguo Zhang, Radoslav I Enchev, Eric H Kong, Edward P Morris, Carol V Robinson, Paula C A da Fonseca, David Barford
Section of Structural Biology, Institute of Cancer Research, Chester Beatty Laboratories, 237 Fulham Road, London, SW3 6JB, UK. |
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| Keywords |  Amino Acid Motifs, Animals, Biocatalysis, Cell Line, Holoenzymes (chemistry), Mass Spectrometry, Microscopy, Electron, Models, Molecular, Molecular Weight, Protein Binding, Protein Conformation, Protein Subunits (chemistry), Recombinant Proteins (chemistry), Saccharomyces cerevisiae (chemistry), Saccharomyces cerevisiae Proteins (chemistry), Scattering, Radiation, Schizosaccharomyces (chemistry), Structure-Activity Relationship, Substrate Specificity, Ubiquitin-Protein Ligase Complexes (chemistry, 6.3.2.19), Ubiquitination, anaphase-promoting complex (6.3.2.19) |
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| Links | DOI: 10.1038/nature09756, PubMed: 21307936 |
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 Map |
| File |  EMD-1843.map ( map file in CCP4 format, 6914 KB ) |
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| Projections & Slices | Size of images: | Axes |  Z (Sec.) |  Y (Row.) |  X (Col.) |
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| Surface |  |  |  |
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Projections |  |  |  |
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Slices (1/3) |  |  |  |
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Slices (1/2) |  |  |  |
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Slices (2/3) |  |  |  |
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Images are generated by Spider package. |
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| Density |
| Contour Level: | 52 (by author), 52 (movie #1): |
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| Minimum - Maximum: | -150.097 - 339.789 |
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| Average (Standard dev.): | 0.606204 (9.63846) |
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|
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| Data Type | Image stored as Reals |
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| Space Group Number | 1 |
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| Map Geometry | | Axis Order : | X | Y | Z |
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| Dimensions : | 120 | 120 | 120 |
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| Origin : | -60 | -60 | -60 |
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| Limit : | 59 | 59 | 59 |
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| Spacing : | 120 | 120 | 120 |
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|
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| Unit Cell | A = 416.4 A , B = 416.4 A , C = 416.4 A ,
alpha = 90 degrees , beta = 90 degrees , gamma = 90 degrees |
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| Pixel Spacing | X = 3.47 A , Y = 3.47 A , Z = 3.47 A |
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| CCP4 map header info | | mode | Image stored as Reals |
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| A/pix X/Y/Z | 3.47 | 3.47 | 3.47 |
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| M x/y/z | 120 | 120 | 120 |
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| origin x/y/z | 0.000 | 0.000 | 0.000 |
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| length x/y/z | 416.400 | 416.400 | 416.400 |
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| alpha/beta/gamma | 90.000 | 90.000 | 90.000 |
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| start NX/NY/NZ | -30 | -24 | -70 |
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| NX/NY/NZ | 61 | 49 | 141 |
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| MAP C/R/S | 1 | 2 | 3 |
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| start NC/NR/NS | -60 | -60 | -60 |
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| NC/NR/NS | 120 | 120 | 120 |
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| start NC,NX/NR,NY/NS,NZ | | | |
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| NC,NX/NR,NY/NS,NZ | | | |
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| D min/max/mean | -150.097 | 339.789 | 0.606 |
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| Annotation Details | Apc4 and Apc5 |
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