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Theoretical models

... DIISOPROPYLPHOSPHORYL- ACETYLCHOLINESTERASE COMPLEXED WITH 1,7-HEPTYLENE-BIS-N,N'- SYN-2-PYRIDINIUMALDOXIME Y.-P.PANG DisplayDownload ... - ACETYLCHOLINESTERASE COMPLEXED WITH 1,7-HEPTYLENE-BIS-N,N'- SYN-2-PYRIDINIUMALDOXIME Y.-P.PANG DisplayDownload ...

[wwPDB] Carbohydrate Remediation

... n N 5 NAG 1 N NAG 1 A NAG 1321 n N 5 NAG 2 N NAG 2 A NAG 1322 n N 5 BMA 3 N BMA 3 A BMA 1323 n N ... 5 MAN 4 N MAN 4 A MAN 1325 n N ...

PDBj Mine 2: SQL Search

... COUNT(DISTINCT t.tax_id) > 1 ORDER BY n DESC [Retrieve PDB chain sequences matching to the Pfam accession ... cc.type = 'InChIKey' AND cc.descriptor = 'ZKHQWZAMYRWXGA-KQYNXXCUSA-N' Using Chemical Component Model (CC Model) [Find PDB entries containing ...

PDBML-extatom

... PDBx:label_asym_id> N N ATOM 1 A A 1 1 ? . VAL VAL N N N 101.601 38.534 -1.962 1 .00 53.29 ...

[wwPDB] Backbone Annotation and Standardization of Peptide Residues is Now Live

... -linking components to label atoms that form the backbone, N- or C-terminal groups. Three new CCD data items ... Updated peptide CCDs will have standardized atom names and backbone / N- and C- terminal annotation. Questions or feedback? Contact deposit- ...

List of Publications

... ., Suzuki, H., Kawabata, T., Yokochi, M., Iwata, T., Kobayashi, N., Fujiwara, T., Kurisu, G. and Nakamura, H. Protein Science 27 ... archival macromolecular structure data in XML Westbrook, J.D., Ito, N., Nakamura, H., Henrick, K., Berman, H.M. Bioinformatics ...

Cite Us / Terms and Conditions

... Suzuki, H., Kawabata, T., Yokochi, M., Iwata, T., Kobayashi, N., Fujiwara, T., Kurisu, G. and Nakamura, H. Protein Science 27 ... from the Riken Structural Genomics/Proteomics Initiative internal database Kobayashi, N. et al. J. Biomol. NMR 53 (4): 311 ...

[wwPDB] Updated Annotation and Standardization of Peptide Residues

... -linking components to label atoms that form the backbone, N- or C-terminal groups. Three new CCD data items ... Updated peptide CCDs will have standardized atom names and backbone / N- and C- terminal annotation. We encourage developers of software ...

Functional annotation example

... of a putative active site near theHPDDGEloop located near the N-terminus. The authors then looked for similar ligand binding ... -Ins deacetylase, from Mycobacterium tuberculosis and GlcNAc-PI de-N-acetylases from several eukaryotes), 1uan was proposed to be ...

[wwPDB] Small Angle Scattering News

... , E., Chakravarthy, S., Chatzimagas, L., Cleveland, T. E., Cowieson, N., Crossett, B., Duff, A. P., Franke, D., Gabel, F., Gillilan ... Jeffries, C. M., Jeong, C., Kirby, N., Krueger, S., Martel, A., Matsui, T., Li, N., Perez, J., Porcar, L., Prange, T., ...

Rest interface examples

... print "Total number of results: " . $total . "\n"; print "Printing the first 10 results:\n"; foreach my $r (@results[0..10]) { foreach my ... $i (@$r) { print $i . ","; } print "\n"; } The above code fetches the results for the query (line 7) and ...

CRNPRED

... : C 6 7 87 : B 21 : 3978 12 N : C 6 7 86 : B 16 : 3615 13 N : C 9 20 71 : B 20 : 3969 14 ...

[wwPDB] Resources for Supporting the Extended PDB ID Format (pdb_00001abc)

... _File_names. The two-letter hash will be based on the n-2 and n-3 characters. For example, PDB entry PDB_12345678 will be under ...

SeSAW Tutorial

... sequence motifs that have been functionally annotated. The first one is an 'N-6 Adenine-specific DNA methylases signature,' colored blue. Note that this sequence ...

[wwPDB] Paper Published on CryoEM Archiving and Validation Recommendations

... , Takayuki Kato, Gabriel C. Lander, Shee-Mei Lok, Steven J. Ludtke, Garib N. Murshudov, Ryan Pye, Grigore D. Pintilie, Jane S. Richardson, Carsten Sachse, Osman ...

New wwPDB X-ray structure validation reports support depositors, journal editors and referees

... B, Devkota B, Downing KH, Egelman EH, Feng Z, Frank J, Grigorieff N, Jiang W, Ludtke SJ, Medalia O, Penczek PA, Rosenthal PB, Rossmann MG ...

Pelmanism game directions

... , I) Lysine (Lys, K) Leucine (Leu, L) Methionine (Met, M) Asparagine (Asn, N) Proline (Pro, P) Glutamine (Gln, Q) Arginine (Arg, R) Serine (Ser, S ...

Snake game directions

... , I) Lysine (Lys, K) Leucine (Leu, L) Methionine (Met, M) Asparagine (Asn, N) Proline (Pro, P) Glutamine (Gln, Q) Arginine (Arg, R) Serine (Ser, S ...

FAQ

... representation of archival macromolecular structure data in XML Westbrook, J.D., Ito, N., Nakamura, H., Henrick, K., Berman, H.M. Bioinformatics 21 (7): 98 (2005 ...

PDBML

... : the representation of archival macromolecular structure data in XML. Westbrook J, Ito N, Nakamura H, Henrick K, Berman HM. Bioinformatics, 2005, 21(7):988-992 ...

Data Format

... : the representation of archival macromolecular structure data in XML. Westbrook J, Ito N, Nakamura H, Henrick K, Berman HM. Bioinformatics, 2005, 21(7):988-992 ...

[wwPDB] Preprint Published on CryoEM Archiving and Validation Recommendations

... , Takayuki Kato, Gabriel C. Lander, Shee-Mei Lok, Steven J. Ludtke, Garib N. Murshudov, Ryan Pye, Grigore D. Pintilie, Jane S. Richardson, Carsten Sachse, Osman ...

About Functional Details page

... enzyme proteins are manually annotated by G.J.Bartlett, C.T.Porter, N. Borkakoti, and J. M. Thornton (http://www.ebi.ac.uk/thornton-srv ...

A paper describing PDBj's new tools and activities published in Protein Science.

... , H., Kinoshita, K., Suzuki, H., Kawabata, T., Yokochi, M., Iwata, T., Kobayashi, N., Fujiwara, T., Kurisu, G. and Nakamura, H. Protein Science 27 (1): 95 ...

[wwPDB] Obituary for John Westbrook

... J. Wagner-Westbrook, Ed.D. and his devoted Mother-in-Law, Joan N. Wagner of Clinton Twp., NJ; many cousins including Chandler Turner (of Portsmouth ...

 

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PDB entries from 2024-03-27

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