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[wwPDB] More than 1,000 SARS-CoV-2 Coronavirus Protein Structures Available

With this week's update, 1,018 SARS-CoV-2-related structures are now freely available from the Protein Data Bank. The first SARS-CoV-2 structure, a high-resolution crystal structure of the coronavirus main protease (PDB 6lu7), was released early in the ...

Mine 2 RDB local install

You can have a local copy of the Mine 2 Relational DataBase by using dump files provided by PDBj. The dump files have been designed to be used with a recent version of PostgreSQL. In the future we will also release a manager script to help install and ...

[wwPDB] PDB50: Registration Open for Virtual Event

Throughout 2021, the wwPDB will be celebrating the 50th anniversary of the PDB archive. The inaugural symposium will be held May 4-5, 2021 in an event hosted by the American Society for Biochemistry and Molecular Biology and organized by the wwPDB ...

[wwPDB] wwPDB EM Validation Reports Now Publicly Available

The wwPDB archive has now been updated to include validation reports for every released set of EM model coordinates in the PDB and every released EMDB map entry. Validation reports provide quantitative and visual assessments of structure quality and enable ...

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The PDBj Logo is allowed to use freely as far as the purpose is related to PDBj (e.g. copyright notices, icons for linking to the PDBj web site such as PDB search results and PDB entry pages). PDBj icon only (color) - jpg (567px x 567px, 300dpi) - png ...

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Statistics

[wwPDB] Time-stamped Copies of wwPDB Archives

A snapshot of the PDB Core archive (ftp://ftp.wwpdb.org) as of January 5th, 2021 has been added to ftp://snapshots.wwpdb.org and ftp://snapshots.pdbj.org. Snapshots have been archived annually since 2005 to provide readily identifiable data sets for ...

[wwPDB] 50 Years of the PDB

The PDB was announced on October 20, 1971 in Crystallography: Protein Data Bank Nature New Biology 233: 223 (1971) doi: 10.1038/newbio233223b0. Fifty years later, the PDB archive contains >170,000 structures of proteins, nucleic acids, and complex ...

[wwPDB] Carbohydrate Remediation

An archival-level carbohydrate remediation project that led to the re-release of over 14,000 PDB structures in July 2020. This update includes diverse oligosaccharides: glycosylation; metabolites such as maltose, sucrose, cellulose fragments; ...

[wwPDB] NMR Restraints Validation Now Available Through OneDep

wwPDB validation reports provided in OneDep now include restraints validation for NMR entries to help users identify potential discrepancies in their data. Recommendations from the wwPDB NMR Validation Task Force (VTF) on how restraints data should be ...

Staff

- Head Kurisu, Genji, Ph.D. (Prof., IPR, Osaka Univ.) - Kurisu, Genji, Ph.D. (Prof., IPR, Osaka Univ.) - Group for Data-in of PDB/EMDB Nakagawa, Atsushi, Ph.D. (Prof., IPR, Osaka Univ.) Yu, Jian, Ph.D. (Assoc. Prof., IPR, Osaka Univ.) Kengaku, Yumiko ( ...

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We share the inquiry with other wwPDB sites. So please send your message in English. About your deposited entries? Please use the communication tool for your deposition using new wwPDB deposition tool. For past depositions using legacy system like ADIT ...

The number of PDB entries processed by PDBj has reached 40,000

PDBj started processing PDB entries from July 2000, and the total number of PDB entries processed by PDBj since then has reached 40,000 in November 2020(Deposition statistics at wwPDB site). Since the global number of PDB entries processed jointly by RCSB, ...

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COVID-19 featured content

Coronavirus, 2020. Modified from the original illustration by David S. Goodsell@RCSB PDB The recent outbreak of the Novel Coronavirus disease (COVID-19) is a serious threat to people all over the world. In order to understand and develop an effective ...

[wwPDB] PDB Turns 49

The PDB was announced on October 20, 1971 in Crystallography: Protein Data Bank Nature New Biology 233: 223 (1971) doi: 10.1038/newbio233223b0. Today, the PDB archive contains ~170,000 structures of proteins, nucleic acids, and complex assemblies that ...

Links

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Explore wwPDB-standardized electron density maps via PDBj EDMap

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PDB entries from 2024-03-27

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