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8B7E
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BU of 8b7e by Molmil
The crystal structure of N828V variant of DNA Pol Epsilon containing UTP in the polymerase active site
Descriptor: CALCIUM ION, DNA polymerase epsilon catalytic subunit A, GLYCEROL, ...
Authors:Parkash, V, Johansson, E.
Deposit date:2022-09-29
Release date:2023-10-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A sensor complements the steric gate when DNA polymerase epsilon discriminates ribonucleotides.
Nucleic Acids Res., 2023
6I78
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BU of 6i78 by Molmil
Galectin-3C in complex with substituted polyfluoroaryl monothiogalactoside derivative 5
Descriptor: (2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-(4-methylphenyl)sulfanyl-4-[4-[2,3,5,6-tetrakis(fluoranyl)-4-(methylamino)phenyl]-1,2,3-triazol-1-yl]oxane-3,5-diol, Galectin-3
Authors:Kumar, R, Peterson, K, Nilsson, U.J, Logan, D.T.
Deposit date:2018-11-15
Release date:2019-01-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Substituted polyfluoroaryl interactions with an arginine side chain in galectin-3 are governed by steric-, desolvation and electronic conjugation effects.
Org. Biomol. Chem., 17, 2019
7LSF
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BU of 7lsf by Molmil
Crystal structure of the human neutralizing antibody Fab fragment T025 bound to TBEV EDIII (Western Subtype)
Descriptor: Envelope protein E, GLYCEROL, SODIUM ION, ...
Authors:Keeffe, J.R, Bjorkman, P.J.
Deposit date:2021-02-18
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Broad and potent neutralizing human antibodies to tick-borne flaviviruses protect mice from disease.
J.Exp.Med., 218, 2021
5FHV
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BU of 5fhv by Molmil
Crystal structure of mCherry after reaction with 2-mercaptoethanol
Descriptor: BETA-MERCAPTOETHANOL, HEXAETHYLENE GLYCOL, TRIETHYLENE GLYCOL, ...
Authors:De Zitter, E, Dedecker, P, Van Meervelt, L.
Deposit date:2015-12-22
Release date:2017-01-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Efficient switching of mCherry fluorescence using chemical caging.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5F98
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BU of 5f98 by Molmil
Crystal structure of RIG-I in complex with Cap-0 RNA
Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Probable ATP-dependent RNA helicase DDX58, ...
Authors:Wang, C, Marcotrigiano, J, Miller, M, Jiang, F.
Deposit date:2015-12-09
Release date:2016-01-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.28 Å)
Cite:Structural basis for m7G recognition and 2'-O-methyl discrimination in capped RNAs by the innate immune receptor RIG-I.
Proc.Natl.Acad.Sci.USA, 113, 2016
8BAZ
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BU of 8baz by Molmil
The surface-exposed lipo-protein of BtuG2 in complex with cyanocobalamin.
Descriptor: COB(II)INAMIDE, CYANIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Whittaker, J, Martinez-Felices, J.M, Guskov, A, Slotboom, D.J.
Deposit date:2022-10-12
Release date:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:The surface-exposed lipo-protein of BtuG2 in complex with cyanocobinamide.
To Be Published
6OZ9
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BU of 6oz9 by Molmil
Ebola virus glycoprotein in complex with EBOV-520 Fab
Descriptor: EBOV-520 Fab heavy chain, EBOV-520 Fab light chain, Envelope glycoprotein, ...
Authors:Milligan, J.C, Altman, P.X, Hui, S, Hastie, K.M, Gilchuk, P, Crowe, J.E, Saphire, E.O.
Deposit date:2019-05-15
Release date:2020-03-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.462 Å)
Cite:Analysis of a Therapeutic Antibody Cocktail Reveals Determinants for Cooperative and Broad Ebolavirus Neutralization.
Immunity, 52, 2020
8Q3H
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BU of 8q3h by Molmil
Capra hircus reactive intermediate deaminase A mutant - A108D
Descriptor: 1,2-ETHANEDIOL, 2-iminobutanoate/2-iminopropanoate deaminase, GLYCEROL
Authors:Rizzi, G, Visentin, C, Di Pisa, F, Ricagno, S.
Deposit date:2023-08-04
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Capra hircus reactive intermediate deaminase A mutant - A108D
To Be Published
7RHC
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BU of 7rhc by Molmil
A new fluorescent protein darkmRuby at pH 9.0
Descriptor: 1,2-ETHANEDIOL, darkmRuby
Authors:Huang, M, Ng, H.L, Zhang, S, Deng, M, Chu, J.
Deposit date:2021-07-16
Release date:2022-07-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Long-range Interaction Affects Brightness and pH Stability of a Dark Fluorescent Protein
To Be Published
6P2I
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BU of 6p2i by Molmil
Acyclic imino acid reductase (Bsp5) in complex with NADPH and D-Arg
Descriptor: 1,2-ETHANEDIOL, D-ARGININE, Glycerate dehydrogenase, ...
Authors:Guo, J, Higgins, M.A, Daniel-Ivad, P, Ryan, K.S.
Deposit date:2019-05-21
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:An Asymmetric Reductase That Intercepts Acyclic Imino Acids Producedin Situby a Partner Oxidase.
J.Am.Chem.Soc., 141, 2019
7RK5
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BU of 7rk5 by Molmil
Mannitol-2-dehydrogenase bound to NADH from Aspergillus fumigatus
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Mannitol 2-dehydrogenase
Authors:Nguyen, S, Bruning, J.B.
Deposit date:2021-07-22
Release date:2022-07-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Targeting the Mannitol Biosynthesis Pathway in Aspergillus fumigatus: Characterisation and Inhibition of Mannitol-2-Dehydrogenase
To Be Published
6DS8
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BU of 6ds8 by Molmil
Crystal structure of MhuD R26S mutant with two Manganese protoporphyrin IX bound per active site
Descriptor: CHLORIDE ION, Heme-degrading monooxygenase HmoB, MANGANESE PROTOPORPHYRIN IX
Authors:Chao, A, Goulding, C.W.
Deposit date:2018-06-13
Release date:2019-06-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of MhuD R26S mutant with two Manganese protoporphyrin IX bound per active site
To Be Published
8BAM
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BU of 8bam by Molmil
Eugenol Oxidase (EUGO) from Rhodococcus jostii RHA1, tenfold mutant active on propanol syringol
Descriptor: 2,6-dimethoxy-4-(3-oxidanylpropyl)phenol, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Alvigini, L, Mattevi, A.
Deposit date:2022-10-11
Release date:2023-10-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:One-Pot Biocatalytic Synthesis of rac -Syringaresinol from a Lignin-Derived Phenol.
Acs Catalysis, 13, 2023
6I7G
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BU of 6i7g by Molmil
Crystal structure of dimeric wild type FICD complexed with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Adenosine monophosphate-protein transferase FICD, DI(HYDROXYETHYL)ETHER, ...
Authors:Perera, L.A, Yan, Y, Read, R.J, Ron, D.
Deposit date:2018-11-16
Release date:2019-09-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:An oligomeric state-dependent switch in the ER enzyme FICD regulates AMPylation and deAMPylation of BiP.
Embo J., 38, 2019
7REG
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BU of 7reg by Molmil
DfrA1 complexed with NADPH and 4'-chloro-3'-(4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl)-[1,1'-biphenyl]-4-carboxamide (UCP1228)
Descriptor: 4'-chloro-3'-[(2S)-4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl][1,1'-biphenyl]-4-carboxamide, CALCIUM ION, Dihydrofolate reductase type 1, ...
Authors:Lombardo, M.N, Wright, D.L.
Deposit date:2021-07-12
Release date:2022-07-27
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure-guided functional studies of plasmid-encoded dihydrofolate reductases reveal a common mechanism of trimethoprim resistance in Gram-negative pathogens.
Commun Biol, 5, 2022
6DSP
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BU of 6dsp by Molmil
LsrB from Clostridium saccharobutylicum in complex with AI-2
Descriptor: (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran, Autoinducer 2-binding protein LsrB
Authors:Torcato, I.M, Xavier, K.B, Miller, S.T.
Deposit date:2018-06-14
Release date:2019-02-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Identification of novel autoinducer-2 receptors inClostridiareveals plasticity in the binding site of the LsrB receptor family.
J.Biol.Chem., 294, 2019
7LR7
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BU of 7lr7 by Molmil
Crystal structure of GH5_18 from Streptomyces cattleya in complex with GlcNAc
Descriptor: 1,2-ETHANEDIOL, 2-(2-ETHOXYETHOXY)ETHANOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Higgins, M.A, Ryan, K.S.
Deposit date:2021-02-16
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:N-Glycan Degradation Pathways in Gut- and Soil-Dwelling Actinobacteria Share Common Core Genes.
Acs Chem.Biol., 16, 2021
5FAC
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BU of 5fac by Molmil
Alanine Racemase from Streptomyces coelicolor A3(2)
Descriptor: Alanine racemase, CHLORIDE ION, PYRIDOXAL-5'-PHOSPHATE
Authors:Tassoni, R, Pannu, N.S.
Deposit date:2015-12-11
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and functional characterization of the alanine racemase from Streptomyces coelicolor A3(2).
Biochem. Biophys. Res. Commun., 483, 2017
6GWK
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BU of 6gwk by Molmil
The crystal structure of Hfq from Caulobacter crescentus
Descriptor: RNA-binding protein Hfq
Authors:Santiago-Frangos, A, Frohlich, K.S, Jeliazkov, J.R, Gray, J.R, Luisi, B.F, Woodson, S.A, Hardwick, S.W.
Deposit date:2018-06-25
Release date:2019-05-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Caulobacter crescentusHfq structure reveals a conserved mechanism of RNA annealing regulation.
Proc.Natl.Acad.Sci.USA, 116, 2019
7LUF
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BU of 7luf by Molmil
HSV1 polymerase ternary complex with dsDNA and PNU-183792
Descriptor: DNA (5'-D(*CP*GP*AP*TP*CP*CP*TP*TP*CP*CP*CP*CP*TP*AP*C)-3'), DNA (5'-D(P*AP*TP*GP*GP*TP*AP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*CP*G)-3'), DNA polymerase, ...
Authors:Hayes, R.P, Klein, D.
Deposit date:2021-02-22
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural understanding of non-nucleoside inhibition in an elongating herpesvirus polymerase.
Nat Commun, 12, 2021
8BAI
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BU of 8bai by Molmil
The surface-exposed lipo-protein of BtuG2 in complex with cyanocobalamin.
Descriptor: CYANOCOBALAMIN, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Whittaker, J, Martinez Felices, J.M, Guskov, A, Slotboom, D.J.
Deposit date:2022-10-11
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:The surface-exposed lipo-protein of BtuG2 in complex with cyanocobalamin.
To Be Published
8BAP
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BU of 8bap by Molmil
Eugenol Oxidase (EUGO) from Rhodococcus jostii RHA1, eightfold mutant active on propanol syringol
Descriptor: 4-[(1E)-3-hydroxyprop-1-en-1-yl]-2,6-dimethoxyphenol, CALCIUM ION, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Alvigini, L, Mattevi, A.
Deposit date:2022-10-11
Release date:2023-10-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:One-Pot Biocatalytic Synthesis of rac -Syringaresinol from a Lignin-Derived Phenol.
Acs Catalysis, 13, 2023
7RK4
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BU of 7rk4 by Molmil
Mannitol-2-dehydrogenase from Aspergillus fumigatus
Descriptor: Mannitol 2-dehydrogenase
Authors:Nguyen, S, Bruning, J.B.
Deposit date:2021-07-22
Release date:2022-07-27
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Targeting the Mannitol Biosynthesis Pathway in Aspergillus fumigatus: Characterisation and Inhibition of Mannitol-2-Dehydrogenase
To Be Published
6I8R
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BU of 6i8r by Molmil
Crystal structure of an ancient sequence-reconstructed Elongation factor Tu (node 170)
Descriptor: Elongation Factor Tu, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Majumdar, S, Bergfors, T, Sanyal, S.
Deposit date:2018-11-20
Release date:2019-11-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of an ancient sequence-reconstructed Elongation factor Tu (node 170)
To be published
6GZ9
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BU of 6gz9 by Molmil
Crystal structure of a POT family transporter in complex with prodrug valacyclovir
Descriptor: 2-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)methoxy]ethyl L-valinate, Peptide ABC transporter permease
Authors:Minhas, G.S, Newstead, S.
Deposit date:2018-07-03
Release date:2018-12-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for prodrug recognition by the SLC15 family of proton-coupled peptide transporters.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019

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PDB entries from 2024-08-28

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