Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5CRA
DownloadVisualize
BU of 5cra by Molmil
Structure of the SdeA DUB Domain
Descriptor: METHYL 4-AMINOBUTANOATE, Polyubiquitin-B, SULFATE ION, ...
Authors:Sheedlo, M.J, Qiu, J, Luo, Z.Q, Das, C.
Deposit date:2015-07-22
Release date:2015-11-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structural basis of substrate recognition by a bacterial deubiquitinase important for dynamics of phagosome ubiquitination.
Proc.Natl.Acad.Sci.USA, 112, 2015
5V6C
DownloadVisualize
BU of 5v6c by Molmil
Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae
Descriptor: GLYCEROL, Hemolysin-related protein
Authors:De, S, Kaus, K, Sinclair, S, Case, B.C, Olson, R.
Deposit date:2017-03-16
Release date:2018-01-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins.
PLoS Pathog., 14, 2018
8K60
DownloadVisualize
BU of 8k60 by Molmil
Cryo-EM structure of Streptomyces coelicolor transcription initiation complex with the global transcription factor AfsR
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Lin, W, Shi, J.
Deposit date:2023-07-24
Release date:2024-07-31
Last modified:2024-08-21
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural insights into transcription activation of the Streptomyces antibiotic regulatory protein, AfsR.
Iscience, 27, 2024
5CXA
DownloadVisualize
BU of 5cxa by Molmil
Crystal structure of the catalytic domain of Human MMP12 in complex with a carboxylate inhibitor related to RXP470
Descriptor: (R)-4-(((S)-1-(((S)-1-amino-4-carboxy-1-oxobutan-2-yl)amino)-4-carboxy-1-oxobutan-2-yl)amino)-3-((3-(3'-chloro-[1,1'-biphenyl]-4-yl)isoxazol-5-yl)methyl)-4-oxobutanoate, CALCIUM ION, Macrophage metalloelastase, ...
Authors:Rouanet-Mehouas, C, Devel, L, Dive, V, Stura, E.A.
Deposit date:2015-07-28
Release date:2016-08-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Zinc-Metalloproteinase Inhibitors: Evaluation of the Complex Role Played by the Zinc-Binding Group on Potency and Selectivity.
J. Med. Chem., 60, 2017
8KBY
DownloadVisualize
BU of 8kby by Molmil
Cryo-EM structure of ATG2A
Descriptor: Autophagy-related protein 2 homolog A
Authors:Wang, Y, Stjepanovic, G.
Deposit date:2023-08-04
Release date:2024-08-07
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.23 Å)
Cite:Structural basis for lipid transfer by the ATG2A-ATG9A complex.
Nat.Struct.Mol.Biol., 2024
4EJG
DownloadVisualize
BU of 4ejg by Molmil
Human Cytochrome P450 2A13 in complex with Nicotine
Descriptor: (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE, Cytochrome P450 2A13, GLYCEROL, ...
Authors:DeVore, N.M, Scott, E.E.
Deposit date:2012-04-06
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nicotine and 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone binding and access channel in human cytochrome P450 2A6 and 2A13 enzymes.
J.Biol.Chem., 287, 2012
4X1Q
DownloadVisualize
BU of 4x1q by Molmil
The crystal structure of mupain-1 in complex with murinised human uPA at pH7.4
Descriptor: Urokinase-type plasminogen activator, mupain-1
Authors:Jiang, L, Zhao, B, Xu, P, Andreasen, P, Huang, M.
Deposit date:2014-11-25
Release date:2015-03-25
Last modified:2015-11-04
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:A cyclic peptidic serine protease inhibitor: increasing affinity by increasing peptide flexibility.
Plos One, 9, 2014
4X1Z
DownloadVisualize
BU of 4x1z by Molmil
Crystal structure of RHDVb P domain in complex with H type 2
Descriptor: SODIUM ION, VP1, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose
Authors:Leuthold, M.M, Hansman, G.S.
Deposit date:2014-11-25
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structural analysis of a rabbit hemorrhagic disease virus binding to histo-blood group antigens.
J.Virol., 89, 2015
4X2Z
DownloadVisualize
BU of 4x2z by Molmil
Structural view and substrate specificity of papain-like protease from Avian Infectious Bronchitis Virus
Descriptor: Nonstructural protein 3, ZINC ION
Authors:Kong, L, Shaw, N, Yan, L, Lou, Z, Rao, Z.
Deposit date:2014-11-27
Release date:2015-01-28
Last modified:2015-04-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural View and Substrate Specificity of Papain-like Protease from Avian Infectious Bronchitis Virus.
J.Biol.Chem., 290, 2015
5CWE
DownloadVisualize
BU of 5cwe by Molmil
Structure of CYP107L2 from Streptomyces avermitilis with lauric acid
Descriptor: Cytochrome P450 hydroxylase, GLYCEROL, LAURIC ACID, ...
Authors:Pham, T.-V, Han, S.-H, Kim, J.-H, Kim, D.-H, Kang, L.-W.
Deposit date:2015-07-28
Release date:2016-08-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structure of CYP107L2 from Streptomyces avermitilis with lauric acid
To Be Published
7VGP
DownloadVisualize
BU of 7vgp by Molmil
Hen egg lysozyme refolded after denaturation at acidic pH
Descriptor: Lysozyme C, SODIUM ION
Authors:Oda, M, Ikura, T, Ito, N.
Deposit date:2021-09-17
Release date:2022-02-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Structural Analysis of Hen Egg Lysozyme Refolded after Denaturation at Acidic pH.
Protein J., 41, 2022
4LEO
DownloadVisualize
BU of 4leo by Molmil
Crystal structure of anti-HER3 Fab RG7116 in complex with the extracellular domains of human Her3 (ERBB3)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, RG7116 Fab heavy chain, ...
Authors:Schiller, C.B, Hopfner, K.P.
Deposit date:2013-06-26
Release date:2013-07-10
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:RG7116, a Therapeutic Antibody That Binds the Inactive HER3 Receptor and Is Optimized for Immune Effector Activation.
Cancer Res., 73, 2013
5DEZ
DownloadVisualize
BU of 5dez by Molmil
Crystal structure of AcMNPV Chitinase A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Ac-ChiA, ...
Authors:Mou, T.-C, Sprang, S.R.
Deposit date:2015-08-26
Release date:2016-09-07
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of AcMNPV Chitinase A
To Be Published
7VGO
DownloadVisualize
BU of 7vgo by Molmil
Hen egg lysozyme
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Oda, M, Ikura, T, Ito, N.
Deposit date:2021-09-17
Release date:2022-02-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural Analysis of Hen Egg Lysozyme Refolded after Denaturation at Acidic pH.
Protein J., 41, 2022
5V6F
DownloadVisualize
BU of 5v6f by Molmil
Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae bound to Mannotriose
Descriptor: Hemolysin-related protein, SULFATE ION, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose
Authors:De, S, Kaus, K, Sinclair, S, Case, B.C, Olson, R.
Deposit date:2017-03-16
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins.
PLoS Pathog., 14, 2018
5D0F
DownloadVisualize
BU of 5d0f by Molmil
Crystal Structure of the Candida Glabrata Glycogen Debranching Enzyme (E564Q) in complex with maltopentaose
Descriptor: Uncharacterized protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Zhai, L, Xiang, S.
Deposit date:2015-08-03
Release date:2016-05-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structure of glycogen debranching enzyme and insights into its catalysis and disease-causing mutations.
Nat Commun, 7, 2016
8KBZ
DownloadVisualize
BU of 8kbz by Molmil
Cryo-EM structure of human ATG9A in LMNG micelles
Descriptor: Autophagy-related protein 9A
Authors:Yang, W, Goran, S.
Deposit date:2023-08-04
Release date:2024-08-07
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (3.97 Å)
Cite:Structural basis for lipid transfer by the ATG2A-ATG9A complex.
Nat.Struct.Mol.Biol., 2024
7V33
DownloadVisualize
BU of 7v33 by Molmil
Active state complex I from rotenone-NADH dataset
Descriptor: (2R,6aS,12aS)-8,9-dimethoxy-2-(prop-1-en-2-yl)-1,2,12,12a-tetrahydrofuro[2',3':7,8][1]benzopyrano[2,3-c][1]benzopyran-6(6aH)-one, (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ...
Authors:Gu, J.K, Yang, M.J.
Deposit date:2021-08-10
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:The coupling mechanism of mammalian mitochondrial complex I.
Nat.Struct.Mol.Biol., 29, 2022
7V32
DownloadVisualize
BU of 7v32 by Molmil
Deactive state complex I from rotenone dataset
Descriptor: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Gu, J.K, Yang, M.J.
Deposit date:2021-08-10
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The coupling mechanism of mammalian mitochondrial complex I.
Nat.Struct.Mol.Biol., 29, 2022
5D3E
DownloadVisualize
BU of 5d3e by Molmil
Crystal structure of human 14-3-3 gamma in complex with CFTR R-domain peptide pS768-pS795
Descriptor: 14-3-3 protein gamma, Cystic fibrosis transmembrane conductance regulator
Authors:Stevers, L.M, Leysen, S.F.R, Ottmann, C.
Deposit date:2015-08-06
Release date:2016-03-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Characterization and small-molecule stabilization of the multisite tandem binding between 14-3-3 and the R domain of CFTR.
Proc.Natl.Acad.Sci.USA, 113, 2016
7V3M
DownloadVisualize
BU of 7v3m by Molmil
Deactive state complex I from rotenone-NADH dataset
Descriptor: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL, 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, ...
Authors:Gu, J.K, Yang, M.J.
Deposit date:2021-08-10
Release date:2022-03-02
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:The coupling mechanism of mammalian mitochondrial complex I.
Nat.Struct.Mol.Biol., 29, 2022
4L9Q
DownloadVisualize
BU of 4l9q by Molmil
X-ray study of human serum albumin complexed with teniposide
Descriptor: (5S,5aR,8aR,9R)-9-(4-hydroxy-3,5-dimethoxyphenyl)-8-oxo-5,5a,6,8,8a,9-hexahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol -5-yl 4,6-O-(thiophen-2-ylmethylidene)-beta-D-glucopyranoside, SERUM ALBUMIN
Authors:Wang, Z, Ho, J.X, Ruble, J, Rose, J.P, Carter, D.C.
Deposit date:2013-06-18
Release date:2013-07-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural studies of several clinically important oncology drugs in complex with human serum albumin.
Biochim.Biophys.Acta, 1830, 2013
8OR9
DownloadVisualize
BU of 8or9 by Molmil
Human holo aromatic L-amino acid decarboxylase (AADC) native structure at physiological pH
Descriptor: Dopa decarboxylase (Aromatic L-amino acid decarboxylase), PYRIDOXAL-5'-PHOSPHATE, TETRAETHYLENE GLYCOL
Authors:Bisello, G, Perduca, M, Bertoldi, M.
Deposit date:2023-04-13
Release date:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Human aromatic amino acid decarboxylase is an asymmetric and flexible enzyme: Implication in aromatic amino acid decarboxylase deficiency.
Protein Sci., 32, 2023
5UNJ
DownloadVisualize
BU of 5unj by Molmil
Structure of Human Liver Receptor Homolog 1 in complex with PGC1a and RJW100
Descriptor: (1R,3aR,6aR)-5-hexyl-4-phenyl-3a-(1-phenylethenyl)-1,2,3,3a,6,6a-hexahydropentalen-1-ol, Nuclear receptor subfamily 5 group A member 2, Peroxisome proliferator-activated gamma coactivator 1-alpha
Authors:Mays, S.G, Ortlund, E.A.
Deposit date:2017-01-31
Release date:2017-04-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.959 Å)
Cite:Structure and Dynamics of the Liver Receptor Homolog 1-PGC1 alpha Complex.
Mol. Pharmacol., 92, 2017
5D8W
DownloadVisualize
BU of 5d8w by Molmil
Structrue of a lucidum protein
Descriptor: Endoglucanase
Authors:Guo, R, Li, Q, Shang, N, Liu, G, Ko, T.P, Chen, C.C, Liu, W.
Deposit date:2015-08-18
Release date:2016-06-29
Last modified:2018-05-23
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Functional and structural analyses of a 1,4-beta-endoglucanase from Ganoderma lucidum.
Enzyme.Microb.Technol., 86, 2016

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon