3IYR
| tmRNA-SmpB: a journey to the center of the bacterial ribosome | Descriptor: | SsrA-binding protein, tmRNA | Authors: | Weis, F, Bron, P, Giudice, E, Rolland, J.P, Thomas, D, Felden, B, Gillet, R. | Deposit date: | 2010-04-16 | Release date: | 2010-10-20 | Last modified: | 2024-02-21 | Method: | ELECTRON MICROSCOPY (13 Å) | Cite: | tmRNA-SmpB: a journey to the centre of the bacterial ribosome. Embo J., 29, 2010
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7X9U
| Type-II KH motif of human mitochondrial RbfA | Descriptor: | Putative ribosome-binding factor A, mitochondrial | Authors: | Kuwasako, K, Suzuki, S, Furue, M, Takizawa, M, Takahashi, M, Tsuda, K, Nagata, T, Watanabe, S, Tanaka, A, Kobayashi, N, Kigawa, T, Guntert, P, Shirouzu, M, Yokoyama, S, Muto, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2022-03-16 | Release date: | 2023-01-25 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | 1 H, 13 C, and 15 N resonance assignments and solution structures of the KH domain of human ribosome binding factor A, mtRbfA, involved in mitochondrial ribosome biogenesis. Biomol.Nmr Assign., 16, 2022
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7PD3
| Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP | Descriptor: | 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... | Authors: | Chandrasekaran, V, Desai, N, Burton, N.O, Yang, H, Price, J, Miska, E.A, Ramakrishnan, V. | Deposit date: | 2021-08-04 | Release date: | 2021-11-17 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | Visualizing formation of the active site in the mitochondrial ribosome. Elife, 10, 2021
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3IYQ
| tmRNA-SmpB: a journey to the center of the bacterial ribosome | Descriptor: | SsrA-binding protein, tmRNA | Authors: | Weis, F, Bron, P, Giudice, E, Rolland, J.P, Thomas, D, Felden, B, Gillet, R. | Deposit date: | 2010-04-16 | Release date: | 2010-10-20 | Last modified: | 2024-02-21 | Method: | ELECTRON MICROSCOPY (13 Å) | Cite: | tmRNA-SmpB: a journey to the centre of the bacterial ribosome. Embo J., 29, 2010
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8APN
| Structure of the mitochondrial ribosome from Polytomella magna with tRNA bound to the P site | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, Hypothetical protein, MAGNESIUM ION, ... | Authors: | Tobiasson, V, Berzina, I, Amunts, A. | Deposit date: | 2022-08-10 | Release date: | 2022-11-16 | Last modified: | 2023-01-18 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements. Nat Commun, 13, 2022
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8APO
| Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites | Descriptor: | A-site tRNA anticodon loop, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Tobiasson, V, Berzina, I, Amunts, A. | Deposit date: | 2022-08-10 | Release date: | 2023-06-21 | Last modified: | 2024-01-10 | Method: | ELECTRON MICROSCOPY (3.2 Å) | Cite: | Structure of a mitochondrial ribosome with fragmented rRNA in complex with membrane-targeting elements. Nat Commun, 13, 2022
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4M5D
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5NKO
| Solution structure of the C-terminal domain of S. aureus Hibernating Promoting Factor (CTD-SaHPF) | Descriptor: | Ribosome hibernation promotion factor | Authors: | Usachev, K.S, Khusainov, I.S, Ayupov, R.K, Validov, S.Z, Kieffer, B, Yusupov, M.M. | Deposit date: | 2017-03-31 | Release date: | 2017-07-05 | Last modified: | 2024-06-19 | Method: | SOLUTION NMR | Cite: | Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF. EMBO J., 36, 2017
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3KA5
| Crystal structure of Ribosome-associated protein Y (PSrp-1) from Clostridium acetobutylicum. Northeast Structural Genomics Consortium target id CaR123A | Descriptor: | Ribosome-associated protein Y (PSrp-1) | Authors: | Seetharaman, J, Neely, H, Wang, D, Janjua, H, Cunningham, K, Owens, L, Xiao, R, Liu, J, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) | Deposit date: | 2009-10-18 | Release date: | 2009-11-03 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of Ribosome-associated protein Y (PSrp-1) from Clostridium acetobutylicum To be Published
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3J15
| Model of ribosome-bound archaeal Pelota and ABCE1 | Descriptor: | ABC transporter ATP-binding protein, ADENOSINE-5'-DIPHOSPHATE, IRON/SULFUR CLUSTER, ... | Authors: | Becker, T, Franckenberg, S, Wickles, S, Shoemaker, C.J, Anger, A.M, Armache, J.-P, Sieber, H, Ungewickell, C, Berninghausen, O, Daberkow, I, Karcher, A, Thomm, M, Hopfner, K.-P, Green, R, Beckmann, R. | Deposit date: | 2011-12-12 | Release date: | 2012-02-22 | Last modified: | 2018-08-22 | Method: | ELECTRON MICROSCOPY (6.6 Å) | Cite: | Structural basis of highly conserved ribosome recycling in eukaryotes and archaea. Nature, 482, 2012
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4CLQ
| Structure of Rcl1p - Bms1p complex | Descriptor: | RIBOSOME BIOGENESIS PROTEIN BMS1, RNA 3'-TERMINAL PHOSPHATE CYCLASE-LIKE PROTEIN | Authors: | Fribourg, S. | Deposit date: | 2014-01-15 | Release date: | 2014-11-26 | Last modified: | 2017-08-23 | Method: | X-RAY DIFFRACTION (2.02 Å) | Cite: | Crucial Role of the Rcl1P-Bms1P Interaction for Yeast Pre-Ribosomal RNA Processing. Nucleic Acids Res., 42, 2014
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8BYV
| Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex | Descriptor: | 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... | Authors: | Bikmullin, A.G, Fatkhullin, B, Stetsenko, A, Guskov, A, Yusupov, M. | Deposit date: | 2022-12-14 | Release date: | 2023-12-27 | Last modified: | 2024-07-10 | Method: | ELECTRON MICROSCOPY (2.89 Å) | Cite: | Yet Another Similarity between Mitochondrial and Bacterial Ribosomal Small Subunit Biogenesis Obtained by Structural Characterization of RbfA from S. aureus. Int J Mol Sci, 24, 2023
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5CXB
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5CXC
| Structure of Ytm1 bound to the C-terminal domain of Erb1 in P 65 2 2 space group | Descriptor: | CHLORIDE ION, Ribosome biogenesis protein ERB1, Ribosome biogenesis protein YTM1 | Authors: | Wegrecki, M, Bravo, J. | Deposit date: | 2015-07-28 | Release date: | 2015-10-28 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | The structure of Erb1-Ytm1 complex reveals the functional importance of a high-affinity binding between two beta-propellers during the assembly of large ribosomal subunits in eukaryotes. Nucleic Acids Res., 43, 2015
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5CYK
| Structure of Ytm1 bound to the C-terminal domain of Erb1-R486E | Descriptor: | CHLORIDE ION, Ribosome biogenesis protein ERB1, Ribosome biogenesis protein YTM1 | Authors: | Wegrecki, M, Bravo, J. | Deposit date: | 2015-07-30 | Release date: | 2015-10-28 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | The structure of Erb1-Ytm1 complex reveals the functional importance of a high-affinity binding between two beta-propellers during the assembly of large ribosomal subunits in eukaryotes. Nucleic Acids Res., 43, 2015
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5ZEY
| M. smegmatis Trans-translation state 70S ribosome | Descriptor: | A-tRNAfMet, SsrA-binding protein, tmRNA | Authors: | Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. | Deposit date: | 2018-02-28 | Release date: | 2018-09-26 | Last modified: | 2024-03-27 | Method: | ELECTRON MICROSCOPY (12.5 Å) | Cite: | Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
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6YE5
| Structure of ribosomal binding factor A RbfA of Staphylococcus aureus bacterium by NMR | Descriptor: | Ribosome-binding factor A | Authors: | Blokhin, D.S, Usachev, K.S, Bikmullin, A.G, Nurullina, L, Garaeva, N, Validov, S, Klochkov, V, Aganov, A, Khusainov, I, Yusupov, M. | Deposit date: | 2020-03-24 | Release date: | 2021-03-31 | Last modified: | 2024-06-19 | Method: | SOLUTION NMR | Cite: | Structure of ribosomal binding factor A RbfA of Staphylococcus aureus bacterium by NMR To Be Published
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5DTC
| UBL Structure | Descriptor: | Ribosome biogenesis protein YTM1 | Authors: | Romes, E.M, Stanley, R.E. | Deposit date: | 2015-09-17 | Release date: | 2015-12-02 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | The Crystal Structure of the Ubiquitin-like Domain of Ribosome Assembly Factor Ytm1 and Characterization of Its Interaction with the AAA-ATPase Midasin. J.Biol.Chem., 291, 2016
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6H57
| Crystal structure of S. cerevisiae DEAH-box RNA helicase Dhr1, essential for small ribosomal subunit biogenesis | Descriptor: | 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ... | Authors: | Roychowdhury, A, Graille, M. | Deposit date: | 2018-07-24 | Release date: | 2019-06-19 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | The DEAH-box RNA helicase Dhr1 contains a remarkable carboxyl terminal domain essential for small ribosomal subunit biogenesis. Nucleic Acids Res., 47, 2019
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5Z1G
| Structure of the Brx1 and Ebp2 complex | Descriptor: | Ribosome biogenesis protein BRX1, SULFATE ION, rRNA-processing protein EBP2 | Authors: | Zheng, S, Ye, K. | Deposit date: | 2017-12-26 | Release date: | 2018-04-11 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.294 Å) | Cite: | Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate Protein Cell, 10, 2019
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5M5H
| RIBOSOME-BOUND YIDC INSERTASE | Descriptor: | Membrane protein insertase YidC | Authors: | Kedrov, A, Wickles, S, Crevenna, A.H, van der Sluis, E, Buschauer, R, Berninghausen, O, Lamb, D.C, Beckmann, R. | Deposit date: | 2016-10-21 | Release date: | 2016-12-14 | Last modified: | 2024-05-08 | Method: | ELECTRON MICROSCOPY (4.5 Å) | Cite: | Structural Dynamics of the YidC:Ribosome Complex during Membrane Protein Biogenesis. Cell Rep, 17, 2016
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2MBY
| NMR Structure of Rrp7 C-terminal Domain | Descriptor: | Ribosomal RNA-processing protein 7 | Authors: | Lin, J, Feng, Y, Ye, K. | Deposit date: | 2013-08-08 | Release date: | 2013-09-25 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | An RNA-Binding Complex Involved in Ribosome Biogenesis Contains a Protein with Homology to tRNA CCA-Adding Enzyme. Plos Biol., 11, 2013
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2L9N
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2CQM
| Solution structure of the mitochondrial ribosomal protein L17 isolog | Descriptor: | Ribosomal protein L17 isolog | Authors: | Suzuki, S, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2005-05-20 | Release date: | 2005-11-20 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Solution structure of the mitochondrial ribosomal protein L17 isolog To be Published
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5COL
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