Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

9EZG
DownloadVisualize
BU of 9ezg by Molmil
Crystal structure of human Casein Kinase II subunit alpha (CK2a1) in complex with 5-((4-((2-aminoethyl)(ethyl)amino)-3-(4H-1,2,4-triazol-4-yl)phenyl)amino)-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidine-3-carbonitrile
Descriptor: 1,2-ETHANEDIOL, 5-[[4-[2-azanylethyl(ethyl)amino]-3-(1,2,4-triazol-4-yl)phenyl]amino]-7-(cyclopropylamino)pyrazolo[1,5-a]pyrimidine-3-carbonitrile, Casein kinase II subunit alpha, ...
Authors:Kraemer, A, Ong, H.W, Yang, X, Brown, J.W, Chang, E, Willson, T, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-04-12
Release date:2024-07-31
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:More than an Amide Bioisostere: Discovery of 1,2,4-Triazole-containing Pyrazolo[1,5- a ]pyrimidine Host CSNK2 Inhibitors for Combatting beta-Coronavirus Replication.
J.Med.Chem., 67, 2024
9FCU
DownloadVisualize
BU of 9fcu by Molmil
CysG(N-16)-H121A mutant in complex with SAH from Kitasatospora cystarginea
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, SAM-dependent methyltransferase
Authors:Kuttenlochner, W, Beller, P, Kaysser, L, Groll, M.
Deposit date:2024-05-15
Release date:2024-08-21
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Deciphering the SAM- and metal-dependent mechanism of O-methyltransferases in cystargolide and belactosin biosynthesis: A structure-activity relationship study.
J.Biol.Chem., 300, 2024
9LDB
DownloadVisualize
BU of 9ldb by Molmil
DESIGN AND SYNTHESIS OF NEW ENZYMES BASED ON THE LACTATE DEHYDROGENASE FRAMEWORK
Descriptor: LACTATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, OXAMIC ACID, ...
Authors:Dunn, C.R, Holbrook, J.J, Muirhead, H.
Deposit date:1991-11-26
Release date:1993-10-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Design and synthesis of new enzymes based on the lactate dehydrogenase framework.
Philos.Trans.R.Soc.London,Ser.B, 332, 1991
9BDZ
DownloadVisualize
BU of 9bdz by Molmil
TA-centric NF-kappaB RelA binding DNA
Descriptor: ACETATE ION, ZINC ION, double-stranded DNA
Authors:Biswas, T, Shahabi, S, Tsodikov, O.V, Wang, V, Ghosh, G.
Deposit date:2024-04-13
Release date:2024-08-07
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Transient interactions modulate the affinity of NF-kappa B transcription factors for DNA.
Proc.Natl.Acad.Sci.USA, 121, 2024
4OY7
DownloadVisualize
BU of 4oy7 by Molmil
Structure of cellulose active LPMO CelS2 (ScLPMO10C) in complex with Copper.
Descriptor: CALCIUM ION, COPPER (II) ION, Putative secreted cellulose binding protein
Authors:Forsberg, Z, Mackenzie, A.K, Sorlie, M, Rohr, A.K, Helland, R, Arvai, A.S, Vaaje-Kolstad, G, Eijsink, V.G.H.
Deposit date:2014-02-11
Release date:2014-05-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and functional characterization of a conserved pair of bacterial cellulose-oxidizing lytic polysaccharide monooxygenases.
Proc.Natl.Acad.Sci.USA, 111, 2014
9J9A
DownloadVisualize
BU of 9j9a by Molmil
Staphylococcus aureus exfoliative toxin D
Descriptor: SULFATE ION, Serine protease, beta-D-glucopyranose
Authors:Tonozuka, T.
Deposit date:2024-08-22
Release date:2024-09-11
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of exfoliative toxin D from Staphylococcus aureus.
Biochem.Biophys.Res.Commun., 733, 2024
4OZA
DownloadVisualize
BU of 4oza by Molmil
Backbone Modifications in the Protein GB1 Helix: beta-3-Ala24, beta-3-Lys28, beta-3-Gln32, beta-3-Asp36
Descriptor: ISOPROPYL ALCOHOL, Streptococcal Protein GB1 Backbone Modified Variant: beta-3-Ala24, beta-3-Lys28, ...
Authors:Reinert, Z.E, Horne, W.S.
Deposit date:2014-02-14
Release date:2014-07-16
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.201 Å)
Cite:Folding Thermodynamics of Protein-Like Oligomers with Heterogeneous Backbones.
Chem Sci, 5, 2014
9EQ0
DownloadVisualize
BU of 9eq0 by Molmil
Crystal structure of human Casein Kinase II subunit alpha (CK2a1) in complex with allosteric ligand FGJG12
Descriptor: Casein kinase II subunit alpha, SULFATE ION, ~{N}-[4-[(3-chloranyl-4-phenyl-phenyl)methylamino]butyl]isoquinoline-5-sulfonamide
Authors:Kraemer, A, Greco, F, Gerninghaus, J, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-03-20
Release date:2024-05-01
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Synthesis and evaluation of chemical linchpins for highly selective CK2 alpha targeting.
Eur.J.Med.Chem., 276, 2024
6MP9
DownloadVisualize
BU of 6mp9 by Molmil
X-ray crystal structure of VioC bound to Fe(II), 2-oxo-5-guanidinopentanoic acid, and succinate
Descriptor: 5-carbamimidamido-2-oxopentanoic acid, Alpha-ketoglutarate-dependent L-arginine hydroxylase, FE (II) ION, ...
Authors:Dunham, N.P, Boal, A.K.
Deposit date:2018-10-05
Release date:2018-11-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:alpha-Amine Desaturation of d-Arginine by the Iron(II)- and 2-(Oxo)glutarate-Dependent l-Arginine 3-Hydroxylase, VioC.
Biochemistry, 57, 2018
9J4I
DownloadVisualize
BU of 9j4i by Molmil
Crystal structure of GH9l Inulin fructotransferases (IFTase) in compex with fruetosyl nystose (GF4)
Descriptor: DFA-III-forming inulin fructotransferase, beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-[alpha-D-glucopyranose-(1-2)]beta-D-fructofuranose, beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-beta-D-fructofuranose-(2-1)-[alpha-D-glucopyranose-(1-2)]beta-D-fructofuranose
Authors:Chen, G, Wang, Z.X, Yang, Y.Q, Li, Y.G, Zhang, T, Ouyang, S.Y, Zhang, L, Chen, Y, Ruan, X.L, Miao, M.
Deposit date:2024-08-09
Release date:2024-09-04
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Elucidation of the mechanism underlying the sequential catalysis of inulin by fructotransferase.
Int.J.Biol.Macromol., 277, 2024
9F9Z
DownloadVisualize
BU of 9f9z by Molmil
Gcase in complex with small molecule inhibitor 1
Descriptor: (2~{S})-1-(2,6-dimethylphenoxy)propan-2-amine, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysosomal acid glucosylceramidase, ...
Authors:Tisi, D, Cleasby, A.
Deposit date:2024-05-09
Release date:2024-07-03
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (2.279 Å)
Cite:Fragment-Based Discovery of a Series of Allosteric-Binding Site Modulators of beta-Glucocerebrosidase.
J.Med.Chem., 67, 2024
9FLQ
DownloadVisualize
BU of 9flq by Molmil
Crystal structure of human Haspin (GSG2) kinase bound to MU1959
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, NICKEL (II) ION, ...
Authors:Kraemer, A, Paruch, K, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2024-06-05
Release date:2024-09-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of human Haspin (GSG2) kinase bound to MU1959
To Be Published
9CX6
DownloadVisualize
BU of 9cx6 by Molmil
Cryo-EM filament structure in FTLD-synuclein
Descriptor: Alpha-synuclein
Authors:Yang, Y, Scheres, H.W.S, Goedert, M.
Deposit date:2024-07-30
Release date:2024-08-14
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM filament structure in FTLD-synuclein from typical multiple system atrophy brain
To Be Published
9B76
DownloadVisualize
BU of 9b76 by Molmil
Crystal structure of humanized 44H10 Fab Version 21
Descriptor: ACETATE ION, POTASSIUM ION, h44H10-V21 Antibody, ...
Authors:Kassardjian, A, Julien, J.P.
Deposit date:2024-03-27
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Humanization of Pan-HLA-DR mAb 44H10 Hinges on Critical Residues in the Antibody Framework.
Antibodies, 13, 2024
9BE0
DownloadVisualize
BU of 9be0 by Molmil
GC-centric NF-kappaB RelA binding DNA
Descriptor: ACETATE ION, DNA (5'-D(*CP*GP*GP*GP*AP*AP*GP*TP*TP*CP*CP*GP*CP*GP*GP*AP*AP*CP*TP*TP*CP*CP*CP*G)-3'), ZINC ION
Authors:Biswas, T, Shahabi, S, Tsodikov, O.V, Ghosh, G.
Deposit date:2024-04-13
Release date:2024-08-07
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Transient interactions modulate the affinity of NF-kappa B transcription factors for DNA.
Proc.Natl.Acad.Sci.USA, 121, 2024
4P10
DownloadVisualize
BU of 4p10 by Molmil
pro-carboxypeptidase U In Complex With 5-(3-aminopropyl)-1-propyl-6,7-dihydro-4H-benzimidazole-5-carboxylic acid
Descriptor: (5R)-5-(3-aminopropyl)-1-propyl-4,5,6,7-tetrahydro-1H-benzimidazole-5-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Carboxypeptidase B2, ...
Authors:Hallberg, K, Sjogren, T.
Deposit date:2014-02-21
Release date:2014-08-13
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design and synthesis of conformationally restricted inhibitors of active thrombin activatable fibrinolysis inhibitor (TAFIa).
Bioorg.Med.Chem., 22, 2014
9FSV
DownloadVisualize
BU of 9fsv by Molmil
Yeast 20S proteasome with human beta2i (1-53) in complex with epoxyketone inhibitor 42
Descriptor: (2S)-N-[(2S)-1-[[(1S)-2-cyclohexyl-1-[(2R,3S,6R,7S)-3-methanoyl-2,6-dimethyl-6,7-bis(oxidanyl)-1,4-oxazepan-7-yl]ethyl]amino]-3-(4-methoxyphenyl)-1-oxidanylidene-propan-2-yl]-2-(2-morpholin-4-ylethanoylamino)-4-oxidanyl-butanamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Maurits, E, Huber, E.M, Dekker, P.M, Wang, X, Heinemeyer, W, Florea, B.I, Groll, M, Overkleeft, H.S.
Deposit date:2024-06-22
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structure-based design of peptide epoxyketones selectively targeting the three human immunoproteasome active sites
to be published
6N96
DownloadVisualize
BU of 6n96 by Molmil
Methylmalonyl-CoA decarboxylase in complex with 2-sulfonate-propionyl-oxa(dethia)-CoA
Descriptor: (2~{R})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethoxy]-1-oxidanylidene-propane-2-sulfonic acid, (2~{S})-1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethoxy]-1-oxidanylidene-propane-2-sulfonic acid, IMIDAZOLE, ...
Authors:Stunkard, L.M, Dixon, A.D, Huth, T.J, Lohman, J.R.
Deposit date:2018-11-30
Release date:2019-04-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Sulfonate/Nitro Bearing Methylmalonyl-Thioester Isosteres Applied to Methylmalonyl-CoA Decarboxylase Structure-Function Studies.
J. Am. Chem. Soc., 141, 2019
9FA3
DownloadVisualize
BU of 9fa3 by Molmil
Gcase in complex with small molecule inhibitor 1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysosomal acid glucosylceramidase, ...
Authors:Tisi, D, Cleasby, A.
Deposit date:2024-05-10
Release date:2024-07-03
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Fragment-Based Discovery of a Series of Allosteric-Binding Site Modulators of beta-Glucocerebrosidase.
J.Med.Chem., 67, 2024
9BBG
DownloadVisualize
BU of 9bbg by Molmil
Co-crystal structure of human DDB1 bound to fragment UB028671
Descriptor: 1,2-ETHANEDIOL, 1H-indol-6-amine, DNA damage-binding protein 1, ...
Authors:Zeng, H, Dong, A, Frommlet, A, Seitova, A, Loppnau, P, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-04-05
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Co-crystal structure of human DDB1 bound to fragment UB028671
To be published
4P1W
DownloadVisualize
BU of 4p1w by Molmil
Crystal structure of Atg13(17BR)-Atg17-Atg29-Atg31 complex
Descriptor: Atg13 17BR, Atg17, Atg29, ...
Authors:Fujioka, Y, Noda, N.N.
Deposit date:2014-02-27
Release date:2014-05-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis of starvation-induced assembly of the autophagy initiation complex.
Nat.Struct.Mol.Biol., 21, 2014
8XH0
DownloadVisualize
BU of 8xh0 by Molmil
Monoclinic crystal structure of green fluorescent protein nowGFP at pH 4.8
Descriptor: GLYCEROL, nowGFP
Authors:Kim, C.U, Kim, J.K.
Deposit date:2023-12-16
Release date:2024-09-11
Last modified:2024-09-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Comparison of two crystal polymorphs of NowGFP reveals a new conformational state trapped by crystal packing.
Acta Crystallogr D Struct Biol, 80, 2024
9FAL
DownloadVisualize
BU of 9fal by Molmil
Gcase in complex with small molecule inhibitor 1
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Tisi, D, Cleasby, A.
Deposit date:2024-05-10
Release date:2024-07-03
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Fragment-Based Discovery of a Series of Allosteric-Binding Site Modulators of beta-Glucocerebrosidase.
J.Med.Chem., 67, 2024
8WEU
DownloadVisualize
BU of 8weu by Molmil
Crystal structure of Feruoyl-CoA Synthetase from Amycolatopsis thermoflava
Descriptor: DI(HYDROXYETHYL)ETHER, Fatty-acyl-CoA synthase
Authors:Seok, J, Kim, K.-J.
Deposit date:2023-09-18
Release date:2024-09-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural analysis of feruloyl-CoA synthetase from Amycolatopsis thermoflava
To Be Published
9LDT
DownloadVisualize
BU of 9ldt by Molmil
DESIGN AND SYNTHESIS OF NEW ENZYMES BASED ON THE LACTATE DEHYDROGENASE FRAMEWORK
Descriptor: LACTATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, OXAMIC ACID, ...
Authors:Dunn, C.R, Holbrook, J.J, Muirhead, H.
Deposit date:1991-11-26
Release date:1993-10-31
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design and synthesis of new enzymes based on the lactate dehydrogenase framework.
Philos.Trans.R.Soc.London,Ser.B, 332, 1991

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon