PDB: 7386 resultsInfo pagesStatus searchChemie searchBIRD

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7V2Q	T.thermophilus 30S ribosome with KsgA, class K6 Descriptor: 16s ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Raina, R, Singh, J, Anand, R, Vinothkumar, K.R. Deposit date: 2021-08-09 Release date: 2022-04-06 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.24 Å) Cite: Decoding the Mechanism of Specific RNA Targeting by Ribosomal Methyltransferases. Acs Chem.Biol., 17, 2022
7V2N	T.thermophilus 30S ribosome with KsgA, class K2 Descriptor: 16s ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Raina, R, Singh, J, Anand, R, Vinothkumar, K.R. Deposit date: 2021-08-09 Release date: 2022-04-06 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Decoding the Mechanism of Specific RNA Targeting by Ribosomal Methyltransferases. Acs Chem.Biol., 17, 2022
7V2M	T.thermophilus 30S ribosome with KsgA, class K1k4 Descriptor: 16s ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Raina, R, Singh, J, Anand, R, Vinothkumar, K.R. Deposit date: 2021-08-09 Release date: 2022-04-06 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Decoding the Mechanism of Specific RNA Targeting by Ribosomal Methyltransferases. Acs Chem.Biol., 17, 2022
7V2O	T.thermophilus 30S ribosome with KsgA, class K4 Descriptor: 16s ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Raina, R, Singh, J, Anand, R, Vinothkumar, K.R. Deposit date: 2021-08-09 Release date: 2022-04-06 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Decoding the Mechanism of Specific RNA Targeting by Ribosomal Methyltransferases. Acs Chem.Biol., 17, 2022
7V2P	T.thermophilus 30S ribosome with KsgA, class K5 Descriptor: 16s ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Raina, R, Singh, J, Anand, R, Vinothkumar, K.R. Deposit date: 2021-08-09 Release date: 2022-04-06 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Decoding the Mechanism of Specific RNA Targeting by Ribosomal Methyltransferases. Acs Chem.Biol., 17, 2022
7V2L	T.thermophilus 30S ribosome with KsgA, class K1k2 Descriptor: 16s ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Raina, R, Singh, J, Anand, R, Vinothkumar, K.R. Deposit date: 2021-08-09 Release date: 2022-04-06 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Decoding the Mechanism of Specific RNA Targeting by Ribosomal Methyltransferases. Acs Chem.Biol., 17, 2022
6OLE	Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Li, W, Cate, J.H.D. Deposit date: 2019-04-16 Release date: 2019-06-19 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule. Nat.Struct.Mol.Biol., 26, 2019
6GZ3	tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... Authors: Flis, J, Holm, M, Rundlet, E.J, Loerke, J, Hilal, T, Dabrowski, M, Buerger, J, Mielke, T, Blanchard, S.C, Spahn, C.M.T, Budkevich, T.V. Deposit date: 2018-07-03 Release date: 2018-12-05 Last modified: 2022-03-30 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: tRNA Translocation by the Eukaryotic 80S Ribosome and the Impact of GTP Hydrolysis. Cell Rep, 25, 2018
6OGG	70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV). Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Svidritskiy, E, Demo, G, Loveland, A.B, Xu, C, Korostelev, A.A. Deposit date: 2019-04-02 Release date: 2019-09-25 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Extensive ribosome and RF2 rearrangements during translation termination. Elife, 8, 2019
6OGF	70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III). Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Svidritskiy, E, Demo, G, Loveland, A.B, Xu, C, Korostelev, A.A. Deposit date: 2019-04-02 Release date: 2019-09-25 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Extensive ribosome and RF2 rearrangements during translation termination. Elife, 8, 2019
6OLZ	Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Li, W, Cate, J.H.D. Deposit date: 2019-04-17 Release date: 2019-06-19 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule. Nat.Struct.Mol.Biol., 26, 2019
6OGI	70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Svidritskiy, E, Demo, G, Loveland, A.B, Xu, C, Korostelev, A.A. Deposit date: 2019-04-02 Release date: 2019-09-25 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Extensive ribosome and RF2 rearrangements during translation termination. Elife, 8, 2019
6OLG	Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Li, W, Cate, J.H.D. Deposit date: 2019-04-16 Release date: 2019-06-19 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural basis for selective stalling of human ribosome nascent chain complexes by a drug-like molecule. Nat.Struct.Mol.Biol., 26, 2019
8EMM	Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Watson, Z.L, Cate, J.H.D. Deposit date: 2022-09-28 Release date: 2023-05-31 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.1 Å) Cite: Atomistic simulations of the Escherichia coli ribosome provide selection criteria for translationally active substrates. Nat.Chem., 15, 2023
3CME	The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui Descriptor: 50S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Simonovic, M, Steitz, T.A. Deposit date: 2008-03-21 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA. Rna, 14, 2008
3CMA	The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui Descriptor: 23S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Simonovic, M, Steitz, T.A. Deposit date: 2008-03-21 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA. Rna, 14, 2008
4V6C	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Zhang, W, Dunkle, J.A, Cate, J.H.D. Deposit date: 2009-06-27 Release date: 2014-07-09 Last modified: 2014-12-10 Method: X-RAY DIFFRACTION (3.19 Å) Cite: Structures of the ribosome in intermediate States of ratcheting. Science, 325, 2009
4V6E	Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Zhang, W, Dunkle, J.A, Cate, J.H.D. Deposit date: 2009-06-28 Release date: 2014-07-09 Last modified: 2014-12-10 Method: X-RAY DIFFRACTION (3.712 Å) Cite: Structures of the ribosome in intermediate States of ratcheting. Science, 325, 2009
8BSJ	Giardia Ribosome in PRE-T Classical State (C) Descriptor: 40S ribosomal protein S21, 40S ribosomal protein S25, 40S ribosomal protein S26, ... Authors: Majumdar, S, Emmerich, A.G, Sanyal, S. Deposit date: 2022-11-25 Release date: 2023-03-22 Last modified: 2023-05-03 Method: ELECTRON MICROSCOPY (6.49 Å) Cite: Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023
6OFX	Non-rotated ribosome (Structure I) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Svidritskiy, E, Demo, G, Loveland, A.B, Xu, C, Korostelev, A.A. Deposit date: 2019-04-01 Release date: 2019-09-25 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Extensive ribosome and RF2 rearrangements during translation termination. Elife, 8, 2019
8G7Q	Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8G7R	Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8G7P	Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8G7S	Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2023-02-16 Release date: 2024-03-06 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structures of the ribosome bound to EF-Tu-isoleucine tRNA elucidate the mechanism of AUG avoidance. Nat.Struct.Mol.Biol., 31, 2024
8BTR	Giardia Ribosome in PRE-T Hybrid State (D2) Descriptor: 5.8S rRNA, 5S rRNA, Large Subunit rRNA, ... Authors: Majumdar, S, Emmerich, A.G, Sanyal, S. Deposit date: 2022-11-29 Release date: 2023-03-22 Last modified: 2023-05-03 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Insights into translocation mechanism and ribosome evolution from cryo-EM structures of translocation intermediates of Giardia intestinalis. Nucleic Acids Res., 51, 2023

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