Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6L01
DownloadVisualize
BU of 6l01 by Molmil
Crystal structure of E.coli DNA gyrase B in complex with 2-oxo-1,2-dihydroquinoline derivative
Descriptor: 2-[3-[[8-(methylamino)-2-oxidanylidene-1~{H}-quinolin-3-yl]carbonylamino]phenyl]ethanoic acid, DNA gyrase subunit B
Authors:Mima, M, Takeuchi, T, Ushiyama, F.
Deposit date:2019-09-25
Release date:2020-05-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Lead Identification of 8-(Methylamino)-2-oxo-1,2-dihydroquinoline Derivatives as DNA Gyrase Inhibitors: Hit-to-Lead Generation Involving Thermodynamic Evaluation.
Acs Omega, 5, 2020
6ZSQ
DownloadVisualize
BU of 6zsq by Molmil
Crystal structure of the Cisplatin beta-Lactoglobulin adduct formed after 18 h of soaking
Descriptor: AMMONIA, Beta-lactoglobulin, PLATINUM (II) ION, ...
Authors:Balasco, N, Ferraro, G, Merlino, A.
Deposit date:2020-07-16
Release date:2020-09-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:Cisplatin binding to beta-lactoglobulin: a structural study.
Dalton Trans, 49, 2020
6ZSR
DownloadVisualize
BU of 6zsr by Molmil
Crystal structure of the Cisplatin beta-Lactoglobulin adduct formed after 72 h of soaking
Descriptor: AMMONIA, Beta-lactoglobulin, PLATINUM (II) ION, ...
Authors:Balasco, N, Ferraro, G, Merlino, A.
Deposit date:2020-07-16
Release date:2020-09-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.005 Å)
Cite:Cisplatin binding to beta-lactoglobulin: a structural study.
Dalton Trans, 49, 2020
5JN9
DownloadVisualize
BU of 5jn9 by Molmil
Crystal structure for the complex of human carbonic anhydrase IV and ethoxyzolamide
Descriptor: 6-ethoxy-1,3-benzothiazole-2-sulfonamide, ACETATE ION, Carbonic anhydrase 4, ...
Authors:Chen, Z, Waheed, A, Di Cera, E, Sly, W.S.
Deposit date:2016-04-29
Release date:2017-05-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Intrinsic thermodynamics of high affinity inhibitor binding to recombinant human carbonic anhydrase IV.
Eur. Biophys. J., 47, 2018
7VEC
DownloadVisualize
BU of 7vec by Molmil
Crystal structure of GABARAP complexed with the TEX264 LIR phosphorylated at Ser271 and Ser272
Descriptor: Gamma-aminobutyric acid receptor-associated protein, TEX264 phospho-LIR
Authors:Noda, N.N.
Deposit date:2021-09-08
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:Phosphorylation by casein kinase 2 enhances the interaction between ER-phagy receptor TEX264 and ATG8 proteins.
Embo Rep., 23, 2022
7VNA
DownloadVisualize
BU of 7vna by Molmil
drosophlia AHR PAS-B domain
Descriptor: Ahr homolog spineless
Authors:Dai, S.Y.
Deposit date:2021-10-10
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.597 Å)
Cite:Structural insight into the ligand binding mechanism of aryl hydrocarbon receptor.
Nat Commun, 13, 2022
6ZS8
DownloadVisualize
BU of 6zs8 by Molmil
X-ray structure of the adduct formed upon treating lysozyme with an aged solution of arsenoplatin-1
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, Lysozyme, ...
Authors:Ferraro, G, Merlino, A.
Deposit date:2020-07-15
Release date:2020-12-23
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.153 Å)
Cite:The first step of arsenoplatin-1 aggregation in solution unveiled by solving the crystal structure of its protein adduct.
Dalton Trans, 50, 2021
7VNH
DownloadVisualize
BU of 7vnh by Molmil
drosophlia AHR PAS-B domain bound by the antagonist alpha-naphthoflavone
Descriptor: 2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE, Ahr homolog spineless
Authors:Dai, S.Y.
Deposit date:2021-10-11
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Structural insight into the ligand binding mechanism of aryl hydrocarbon receptor.
Nat Commun, 13, 2022
3NHZ
DownloadVisualize
BU of 3nhz by Molmil
Structure of N-terminal Domain of MtrA
Descriptor: MAGNESIUM ION, Two component system transcriptional regulator mtrA
Authors:Barbieri, C.M, Mack, T.R, Robinson, V.L, Miller, M.T, Stock, A.M.
Deposit date:2010-06-14
Release date:2010-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Regulation of response regulator autophosphorylation through interdomain contacts.
J.Biol.Chem., 285, 2010
4J8S
DownloadVisualize
BU of 4j8s by Molmil
Crystal structure of human CNOT1 MIF4G domain in complex with a TTP peptide
Descriptor: CCR4-NOT transcription complex subunit 1, Tristetraprolin
Authors:Frank, F, Fabian, M.R, Rouya, C, Siddiqui, N, Lai, W.S, Karetnikov, A, Blackshear, P.J, Sonenberg, N, Nagar, B.
Deposit date:2013-02-14
Release date:2013-05-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural basis for the recruitment of the human CCR4-NOT deadenylase complex by tristetraprolin.
Nat.Struct.Mol.Biol., 20, 2013
6KZV
DownloadVisualize
BU of 6kzv by Molmil
Crystal structure of E.coli DNA gyrase B in complex with 2-oxo-1,2-dihydroquinoline derivative
Descriptor: DNA gyrase subunit B, ~{N}-[2-[[cyclohexyl(methyl)amino]methyl]phenyl]-2-oxidanylidene-1~{H}-quinoline-3-carboxamide
Authors:Mima, M, Ushiyama, F.
Deposit date:2019-09-25
Release date:2020-05-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Lead Identification of 8-(Methylamino)-2-oxo-1,2-dihydroquinoline Derivatives as DNA Gyrase Inhibitors: Hit-to-Lead Generation Involving Thermodynamic Evaluation.
Acs Omega, 5, 2020
7VHY
DownloadVisualize
BU of 7vhy by Molmil
Crystal structure of EP300 HAT domain in complex with compound (+)-3
Descriptor: Histone acetyltransferase p300, ZINC ION, [(6R)-6-(1H-indazol-4-ylmethyl)-1,4-oxazepan-4-yl]-[1-(4-methoxyphenyl)cyclopentyl]methanone
Authors:Takahashi, M, Hanzawa, H.
Deposit date:2021-09-24
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of EP300/CBP histone acetyltransferase inhibitors through scaffold hopping of 1,4-oxazepane ring.
Bioorg.Med.Chem.Lett., 66, 2022
3JPS
DownloadVisualize
BU of 3jps by Molmil
Ternary complex of DNA polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro methyl methylene triphosphate
Descriptor: 2'-deoxy-5'-O-[(S)-{[(S)-[(1R)-1-fluoro-1-phosphonoethyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]guanosine, 5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3', ...
Authors:Batra, V.K, Upton, J, Kashmerov, B, Beard, W.A, Wilson, S.H, Goodman, M.F, McKenna, C.E.
Deposit date:2009-09-04
Release date:2010-06-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Halogenated beta,gamma-Methylene- and Ethylidene-dGTP-DNA Ternary Complexes with DNA Polymerase beta: Structural Evidence for Stereospecific Binding of the Fluoromethylene Analogues.
J.Am.Chem.Soc., 132, 2010
6L2L
DownloadVisualize
BU of 6l2l by Molmil
The structure of the tRNA-specific deaminase from M. capricolum
Descriptor: Nucleoside deaminase family protein, ZINC ION
Authors:Xie, W, Liu, H, Wu, S.
Deposit date:2019-10-05
Release date:2020-08-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.40045834 Å)
Cite:Structure of a tRNA-specific deaminase with compromised deamination activity.
Biochem.J., 477, 2020
6L13
DownloadVisualize
BU of 6l13 by Molmil
Crystal structure of Ser/Thr kinase Pim1 in complex with 10-DEBC derivatives
Descriptor: 2-chloranyl-10-(2-piperidin-4-ylethyl)phenoxazine, Serine/threonine-protein kinase pim-1
Authors:Zhang, W, Xie, Y, Cao, R, Huang, N, Zhou, Y.
Deposit date:2019-09-27
Release date:2020-05-27
Last modified:2020-07-08
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Structure-Based Optimization of 10-DEBC Derivatives as Potent and Selective Pim-1 Kinase Inhibitors.
J.Chem.Inf.Model., 60, 2020
7VI0
DownloadVisualize
BU of 7vi0 by Molmil
Crystal structure of EP300 HAT domain in complex with compound 11
Descriptor: (4S)-N-(3H-indazol-4-yl)-3-[1-(4-methoxyphenyl)cyclopentyl]carbonyl-1,1-bis(oxidanylidene)-1,3-thiazolidine-4-carboxamide, Histone acetyltransferase p300, ZINC ION
Authors:Takahashi, M, Hanzawa, H.
Deposit date:2021-09-24
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Discovery of EP300/CBP histone acetyltransferase inhibitors through scaffold hopping of 1,4-oxazepane ring.
Bioorg.Med.Chem.Lett., 66, 2022
3G6D
DownloadVisualize
BU of 3g6d by Molmil
Crystal structure of the complex between CNTO607 Fab and IL-13
Descriptor: CNTO607 Fab Heavy chain, CNTO607 Fab Light chain, Interleukin-13, ...
Authors:Teplyakov, A, Obmolova, G, Gilliland, G.L.
Deposit date:2009-02-06
Release date:2009-04-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Epitope mapping of anti-interleukin-13 neutralizing antibody CNTO607.
J.Mol.Biol., 389, 2009
7UNH
DownloadVisualize
BU of 7unh by Molmil
De novo designed chlorophyll dimer protein in apo state, SP2
Descriptor: 1,2-ETHANEDIOL, SP2 designed chlorophyll dimer protein
Authors:Kennedy, M.A, Stoddard, B.L, Ennist, N.M.
Deposit date:2022-04-11
Release date:2023-04-19
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:De novo design of proteins housing excitonically coupled chlorophyll special pairs.
Nat.Chem.Biol., 2024
7UUK
DownloadVisualize
BU of 7uuk by Molmil
Crystal structure of aminoglycoside resistance enzyme ApmA, complex with tobramycin
Descriptor: Aminocyclitol acetyltransferase ApmA, CHLORIDE ION, TOBRAMYCIN
Authors:Stogios, P.J, Evdokimova, E, Di Leo, R, Bordeleau, E, Wright, G.D, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:2022-04-28
Release date:2023-04-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Mechanistic plasticity in ApmA enables aminoglycoside promiscuity for resistance.
Nat.Chem.Biol., 20, 2024
7ULR
DownloadVisualize
BU of 7ulr by Molmil
recombinant kappa-bungarotoxin
Descriptor: Kappa-bungarotoxin
Authors:Xu, J, Lei, X, Chen, L.
Deposit date:2022-04-05
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of recombinant kappa-bungarotoxin at 1.8 Angstroms resolution.
To Be Published
7ULB
DownloadVisualize
BU of 7ulb by Molmil
recombinant Mambalgin-1
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Mambalgin-1
Authors:Xu, J, Lei, X, Chen, L.
Deposit date:2022-04-04
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structure of recombinant mambalgin at 2.49 Angstroms resolution.
To Be Published
6L2Q
DownloadVisualize
BU of 6l2q by Molmil
Threonyl-tRNA synthetase from Salmonella enterica in complex with an inhibitor
Descriptor: (2S,3R)-2-azanyl-N-[(E)-4-[6,7-bis(chloranyl)-4-oxidanylidene-quinazolin-3-yl]but-2-enyl]-3-oxidanyl-butanamide, 1,2-ETHANEDIOL, Threonine--tRNA ligase, ...
Authors:Guo, J, Chen, B, Zhou, H.
Deposit date:2019-10-05
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of novel tRNA-amino acid dual-site inhibitors against threonyl-tRNA synthetase by fragment-based target hopping.
Eur.J.Med.Chem., 187, 2019
6L7H
DownloadVisualize
BU of 6l7h by Molmil
crystal structure of GgCGT in complex with UDP and Nothofagin
Descriptor: 1-[3-[(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-2,4,6-tris(oxidanyl)phenyl]-3-(4-hydroxyphenyl)propan-1-one, GgCGT1, URIDINE-5'-DIPHOSPHATE
Authors:Zhang, M, Li, F.D, Ye, M.
Deposit date:2019-11-01
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Functional Characterization and Structural Basis of an Efficient Di-C-glycosyltransferase fromGlycyrrhiza glabra.
J.Am.Chem.Soc., 142, 2020
7ULQ
DownloadVisualize
BU of 7ulq by Molmil
Recombinant Hannalgesin
Descriptor: ACETATE ION, GLYCEROL, Long neurotoxin OH-55, ...
Authors:Xu, J, Lei, X, Chen, L.
Deposit date:2022-04-05
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of recombinant Hannalgesin at 2.2 Angstroms resolution.
To Be Published
6KZZ
DownloadVisualize
BU of 6kzz by Molmil
Crystal structure of E.coli DNA gyrase B in complex with 2-oxo-1,2-dihydroquinoline derivative
Descriptor: 4-[[8-(methylamino)-2-oxidanylidene-1~{H}-quinolin-3-yl]carbonylamino]benzoic acid, DNA gyrase subunit B
Authors:Mima, M, Takeuchi, T, Ushiyama, F.
Deposit date:2019-09-25
Release date:2020-05-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Lead Identification of 8-(Methylamino)-2-oxo-1,2-dihydroquinoline Derivatives as DNA Gyrase Inhibitors: Hit-to-Lead Generation Involving Thermodynamic Evaluation.
Acs Omega, 5, 2020

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon