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6QJS
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BU of 6qjs by Molmil
Crystal structure of a DNA dodecamer containing a tetramethylpiperidinoxyl (nitroxide) spin label
Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(P*GP*CP*AP*AP*AP*TP*TP*(S6M)P*GP*CP*G)-3')
Authors:Hardwick, J.S, Haugland, M.M, Ptchelkine, D, Brown, T, Anderson, E.E.
Deposit date:2019-01-24
Release date:2020-02-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:2'-Alkynyl spin-labelling is a minimally perturbing tool for DNA structural analysis.
Nucleic Acids Res., 48, 2020
7P84
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BU of 7p84 by Molmil
Crystal structure of L147A/I351A variant of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii in complex with ONB-SAM (2-nitro benzyme S-adenosyl-methionine)
Descriptor: MAGNESIUM ION, S-adenosylmethionine synthase, TRIPHOSPHATE, ...
Authors:Herrmann, E, Peters, A, Cornelissen, N.V, Rentmeister, A, Kuemmel, D.
Deposit date:2021-07-21
Release date:2021-11-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.054 Å)
Cite:Visible-Light Removable Photocaging Groups Accepted by MjMAT Variant: Structural Basis and Compatibility with DNA and RNA Methyltransferases.
Chembiochem, 23, 2022
7P8M
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BU of 7p8m by Molmil
Crystal structure of L147A/I351A variant of S-adenosylmethionine synthetase from Methanocaldococcus jannaschii in complex with DMNB-SAM (4,5-dimethoxy-2-nitro benzyme S-adenosyl-methionine)
Descriptor: 4,5-dimethoxy-2-nitro benzyme S-adenosyl-methionine, MAGNESIUM ION, S-adenosylmethionine synthase, ...
Authors:Herrmann, E, Peters, A, Cornelissen, N.V, Rentmeister, A, Kuemmel, D.
Deposit date:2021-07-23
Release date:2021-11-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Visible-Light Removable Photocaging Groups Accepted by MjMAT Variant: Structural Basis and Compatibility with DNA and RNA Methyltransferases.
Chembiochem, 23, 2022
8TWL
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BU of 8twl by Molmil
Cryo-EM structure of Aldolase collected by SerialEM on Glacios at 2.7 Angstrom resolution
Descriptor: Fructose-bisphosphate aldolase A
Authors:Jia, L, Ruben, E.A, Olsen, S.K, Wasmuth, E.V.
Deposit date:2023-08-21
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structure of Aldolase collected by SerialEM on Glacios at 2.7 Angstrom resolution
To Be Published
4YB6
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BU of 4yb6 by Molmil
Adenosine triphosphate phosphoribosyltransferase from Campylobacter jejuni in complex with the inhibitors AMP and histidine
Descriptor: ADENOSINE MONOPHOSPHATE, ATP phosphoribosyltransferase, DI(HYDROXYETHYL)ETHER, ...
Authors:Mittelstaedt, G, Moggre, G.-J, Parker, E.J.
Deposit date:2015-02-18
Release date:2016-03-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Campylobacter jejuni adenosine triphosphate phosphoribosyltransferase is an active hexamer that is allosterically controlled by the twisting of a regulatory tail.
Protein Sci., 25, 2016
7PBJ
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BU of 7pbj by Molmil
Cryo-EM structure of the GroEL-GroES complex with ADP bound to both rings ("wide" conformation).
Descriptor: 10 kDa chaperonin, 60 kDa chaperonin, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Pichkur, E.B, Stanishneva-Konovalova, T.B.
Deposit date:2021-08-02
Release date:2021-11-24
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Novel cryo-EM structure of an ADP-bound GroEL-GroES complex.
Sci Rep, 11, 2021
8TWK
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BU of 8twk by Molmil
Cryo-EM structure of Aldolase collected by EPU on Glacios at 2.6 Angstrom resolution
Descriptor: Fructose-bisphosphate aldolase A
Authors:Jia, L, Ruben, E.A, Olsen, S.K, Wasmuth, E.V.
Deposit date:2023-08-21
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Cryo-EM structure of Aldolase collected by EPU on Glacios at 2.6 Angstrom resolution
To Be Published
7QAN
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BU of 7qan by Molmil
Cytochrome P450 Enzyme AbyV
Descriptor: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, CHLORIDE ION, Cytochrome P450, ...
Authors:Parnell, A.E, Back, C.R, Race, P.R.
Deposit date:2021-11-17
Release date:2022-11-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:The Role of Cytochrome P450 AbyV in the Final Stages of Abyssomicin C Biosynthesis.
Angew.Chem.Int.Ed.Engl., 62, 2023
6NCU
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BU of 6ncu by Molmil
Interleukin-37 residues 53-206- dimer
Descriptor: Interleukin-37
Authors:Eisenmesser, E.Z.
Deposit date:2018-12-12
Release date:2019-03-13
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Interleukin-37 monomer is the active form for reducing innate immunity.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
5K15
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BU of 5k15 by Molmil
Crystal structure of laccase from Thermus thermophilus HB27 (Cu2PO, 8 min)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Laccase
Authors:Diaz-Vilchis, A, Ruiz-Arellano, R.R, Rosas-Benitez, E, Rudino-Pinera, E.
Deposit date:2016-05-17
Release date:2017-05-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Preserving metallic sites affected by radiation damage: the CuT2 case in Thermus thermophilus multicopper oxidase
To be Published
8TWM
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BU of 8twm by Molmil
Cryo-EM structure of Aldolase collected by Leginon on Glacios at 2.6 Angstrom resolution
Descriptor: Fructose-bisphosphate aldolase A
Authors:Jia, L, Ruben, E.A, Olsen, S.K, Wasmuth, E.V.
Deposit date:2023-08-21
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Cryo-EM structure of Aldolase collected by Leginon on Glacios at 2.6 Angstrom resolution
To Be Published
5K4V
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BU of 5k4v by Molmil
Three-dimensional structure of L-threonine 3-dehydrogenase from Trypanosoma brucei bound to NAD+ refined to 2.2 angstroms
Descriptor: ACETATE ION, GLYCEROL, L-threonine 3-dehydrogenase, ...
Authors:Adjogatse, E.A, Erskine, P.T, Cooper, J.B.
Deposit date:2016-05-22
Release date:2017-11-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and function of L-threonine-3-dehydrogenase from the parasitic protozoan Trypanosoma brucei revealed by X-ray crystallography and geometric simulations.
Acta Crystallogr D Struct Biol, 74, 2018
5UIO
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BU of 5uio by Molmil
structure of DHFR with bound DAP, p-ABG and NADP
Descriptor: BETA-MERCAPTOETHANOL, Dihydrofolate reductase, FORMIC ACID, ...
Authors:Pedersen, L.C, London, R.E.
Deposit date:2017-01-14
Release date:2017-11-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.929 Å)
Cite:A Structural Basis for Biguanide Activity.
Biochemistry, 56, 2017
5K7A
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BU of 5k7a by Molmil
Crystal structure of laccase fron Thermus thermophilus HB27 (sodium nitrate 1.5 min)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Laccase
Authors:Diaz-Vilchis, A, Ruiz-Arellano, R.R, Rosas-Benitez, E, Rudino-Pinera, E.
Deposit date:2016-05-25
Release date:2017-06-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Preserving metalic sites affected by radiation damage: the CuT2 case in Thermus thermophilus multicopper oxidase
To be Published
4Y8S
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BU of 4y8s by Molmil
Yeast 20S proteasome beta2-H116D mutant in complex with Ac-LAE-ep
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ac-LAE-ep, MAGNESIUM ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2015-02-16
Release date:2015-06-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J.Am.Chem.Soc., 137, 2015
5UM9
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BU of 5um9 by Molmil
Flap endonuclease 1 (FEN1) D86N with 5'-flap substrate DNA and Sm3+
Descriptor: DNA (5'-D(*AP*CP*CP*GP*TP*CP*C)-3'), DNA (5'-D(*AP*CP*TP*CP*TP*GP*CP*CP*TP*CP*AP*AP*GP*AP*CP*GP*GP*T)-3'), DNA (5'-D(P*TP*CP*TP*TP*GP*AP*GP*GP*CP*AP*GP*AP*GP*T)-3'), ...
Authors:Tsutakawa, S.E, Arvai, A.S, Tainer, J.A.
Deposit date:2017-01-26
Release date:2017-06-28
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.805 Å)
Cite:Phosphate steering by Flap Endonuclease 1 promotes 5'-flap specificity and incision to prevent genome instability.
Nat Commun, 8, 2017
6U96
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BU of 6u96 by Molmil
Actin phalloidin at BeFx state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Das, S, Ge, P, Durer, Z.A.O, Grintsevich, E.E, Zhou, Z.H, Reisler, E.
Deposit date:2019-09-06
Release date:2020-05-13
Last modified:2020-05-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:D-loop Dynamics and Near-Atomic-Resolution Cryo-EM Structure of Phalloidin-Bound F-Actin.
Structure, 28, 2020
4Y8I
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BU of 4y8i by Molmil
Yeast 20S proteasome in complex with Ac-PLL-ep
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ac-PLL-ep, CHLORIDE ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2015-02-16
Release date:2015-06-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J.Am.Chem.Soc., 137, 2015
4YA9
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BU of 4ya9 by Molmil
Yeast 20S proteasome beta2-H114D mutant in complex with Ac-LAD-ep
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ac-LAD-ep, CHLORIDE ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2015-02-17
Release date:2015-06-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Systematic Analyses of Substrate Preferences of 20S Proteasomes Using Peptidic Epoxyketone Inhibitors.
J.Am.Chem.Soc., 137, 2015
6NY2
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BU of 6ny2 by Molmil
CasX-gRNA-DNA(45bp) state I
Descriptor: CasX, DNA Non-target strand, DNA target strand, ...
Authors:Liu, J.J, Orlova, N, Nogales, E, Doudna, J.A.
Deposit date:2019-02-10
Release date:2019-02-27
Last modified:2019-12-25
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:CasX enzymes comprise a distinct family of RNA-guided genome editors.
Nature, 566, 2019
5JQX
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BU of 5jqx by Molmil
Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with phosphoglyceric acid (PGA) - GpgS*PGA
Descriptor: 3-PHOSPHOGLYCERIC ACID, Glucosyl-3-phosphoglycerate synthase
Authors:Albesa-Jove, D, Sancho-Vaello, E, Rodrigo-Unzueta, A, Comino, N, Carreras-Gonzalez, A, Arrasate, P, Urresti, S, Guerin, M.E.
Deposit date:2016-05-05
Release date:2017-05-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.82 Å)
Cite:Structural Snapshots and Loop Dynamics along the Catalytic Cycle of Glycosyltransferase GpgS.
Structure, 25, 2017
6O1L
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BU of 6o1l by Molmil
Architectural principles for Hfq/Crc-mediated regulation of gene expression Hfq-Crc-amiE 2:3:2 complex
Descriptor: Catabolite repression control protein, RNA (5'-R(*AP*AP*AP*AP*AP*UP*AP*AP*CP*AP*AP*CP*AP*AP*GP*AP*GP*G)-3'), RNA-binding protein Hfq
Authors:Pei, X.Y, Dendooven, T, Sonnleitner, E, Chen, S, Blasi, U, Luisi, B.F.
Deposit date:2019-02-20
Release date:2019-03-13
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Architectural principles for Hfq/Crc-mediated regulation of gene expression.
Elife, 8, 2019
8UWV
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BU of 8uwv by Molmil
Crystal structure of BT3984 SusD-like from Bacteroides thetaiotaomicron VPI-5482 at 1.1 A resolution (Space group P21)
Descriptor: BT3984 SusD-like, MAGNESIUM ION
Authors:Sastre, D.E, Navarro, M.V.A.S, Sundberg, E.J.
Deposit date:2023-11-08
Release date:2023-11-22
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Crystal structure of BT3984 SusD-like from Bacteroides thetaiotaomicron VPI-5482 at 1.1 A resolution (Space group P21)
To Be Published
6UEU
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BU of 6ueu by Molmil
Crystal structure of BF DNA polymerase F710Y mutant bound to tetrahydrofuran and dATP
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*(3DR)P*AP*CP*GP*TP*GP*AP*TP*CP*G)-3'), ...
Authors:Wu, E.Y, Beese, L.S.
Deposit date:2019-09-23
Release date:2020-09-30
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for blockage of DNA synthesis by a thymine dimer lesion in a high-fidelity DNA polymerase
To Be Published
6NJ9
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BU of 6nj9 by Molmil
Active state Dot1L bound to the H2B-Ubiquitinated nucleosome, 2-to-1 complex
Descriptor: 601 DNA Strand 1, 601 DNA Strand 2, Histone H2A type 1, ...
Authors:Worden, E.J, Hoffmann, N.A, Wolberger, C.
Deposit date:2019-01-02
Release date:2019-02-20
Last modified:2021-06-16
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Mechanism of Cross-talk between H2B Ubiquitination and H3 Methylation by Dot1L.
Cell, 176, 2019

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PDB entries from 2024-09-25

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