PDB: 1147 resultsInfo pagesStatus searchChemie searchBIRD

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6FVW	26S proteasome, s4 state Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, ... Authors: Eisele, M.R, Reed, R.G, Rudack, T, Schweitzer, A, Beck, F, Nagy, I, Pfeifer, G, Plitzko, J.M, Baumeister, W, Tomko, R.J, Sakata, E. Deposit date: 2018-03-05 Release date: 2018-08-29 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating. Cell Rep, 24, 2018
5WXH	Crystal structure of TAF3 PHD finger bound to H3K4me3 Descriptor: Histone H3K4me3, Transcription initiation factor TFIID subunit 3, ZINC ION Authors: Zhao, S, Huang, J, Li, H. Deposit date: 2017-01-07 Release date: 2017-08-16 Last modified: 2017-09-13 Method: X-RAY DIFFRACTION (1.297 Å) Cite: Kinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5WXG	Structure of TAF PHD finger domain binds to H3(1-15)K4ac Descriptor: Histone H3K4ac, MAGNESIUM ION, Transcription initiation factor TFIID subunit 3, ... Authors: Zhao, S, Li, H. Deposit date: 2017-01-07 Release date: 2017-08-16 Last modified: 2017-09-13 Method: X-RAY DIFFRACTION (1.703 Å) Cite: Kinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5XMY	Crystal structure of TAF3 PHD finger bound to H3K4me3Q5ser Descriptor: Histone peptide H3(1-15)K4me3Q5ser, Transcription initiation factor TFIID subunit 3, ZINC ION Authors: Zhao, S, Zhang, B, Li, H. Deposit date: 2017-05-16 Release date: 2018-11-28 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.699 Å) Cite: Crystal structure of TAF3 PHD finger bound to H3K4me3Q5ser to be published
6FVV	26S proteasome, s3 state Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, ... Authors: Eisele, M.R, Reed, R.G, Rudack, T, Schweitzer, A, Beck, F, Nagy, I, Pfeifer, G, Plitzko, J.M, Baumeister, W, Tomko, R.J, Sakata, E. Deposit date: 2018-03-05 Release date: 2018-08-22 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (5.4 Å) Cite: Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating. Cell Rep, 24, 2018
6FVY	26S proteasome, s6 state Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, ... Authors: Eisele, M.R, Reed, R.G, Rudack, T, Schweitzer, A, Beck, F, Nagy, I, Pfeifer, G, Plitzko, J.M, Baumeister, W, Tomko, R.J, Sakata, E. Deposit date: 2018-03-05 Release date: 2018-08-22 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (6.1 Å) Cite: Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating. Cell Rep, 24, 2018
5MPA	26S proteasome in presence of ATP (s2) Descriptor: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ... Authors: Wehmer, M, Rudack, T, Beck, F, Aufderheide, A, Pfeifer, G, Plitzko, J.M, Foerster, F, Schulten, K, Baumeister, W, Sakata, E. Deposit date: 2016-12-16 Release date: 2017-03-08 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structural insights into the functional cycle of the ATPase module of the 26S proteasome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MP9	26S proteasome in presence of ATP (s1) Descriptor: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ... Authors: Wehmer, M, Rudack, T, Beck, F, Aufderheide, A, Pfeifer, G, Plitzko, J.M, Foerster, F, Schulten, K, Baumeister, W, Sakata, E. Deposit date: 2016-12-16 Release date: 2017-03-08 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural insights into the functional cycle of the ATPase module of the 26S proteasome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5MPB	26S proteasome in presence of AMP-PNP (s3) Descriptor: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ... Authors: Wehmer, M, Rudack, T, Beck, F, Aufderheide, A, Pfeifer, G, Plitzko, J.M, Foerster, F, Schulten, K, Baumeister, W, Sakata, E. Deposit date: 2016-12-16 Release date: 2017-03-08 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (7.8 Å) Cite: Structural insights into the functional cycle of the ATPase module of the 26S proteasome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5N61	RNA polymerase I initially transcribing complex Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Engel, C, Gubbey, T, Neyer, S, Sainsbury, S, Oberthuer, C, Baejen, C, Bernecky, C, Cramer, P. Deposit date: 2017-02-14 Release date: 2017-04-05 Last modified: 2019-10-02 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural Basis of RNA Polymerase I Transcription Initiation. Cell, 169, 2017
5N5Y	Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation III) Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Engel, C, Gubbey, T, Neyer, S, Sainsbury, S, Oberthuer, C, Baejen, C, Bernecky, C, Cramer, P. Deposit date: 2017-02-14 Release date: 2017-04-05 Last modified: 2018-10-03 Method: ELECTRON MICROSCOPY (7.7 Å) Cite: Structural Basis of RNA Polymerase I Transcription Initiation. Cell, 169, 2017
5N60	Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation I) Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Engel, C, Gubbey, T, Neyer, S, Sainsbury, S, Oberthuer, C, Baejen, C, Bernecky, C, Cramer, P. Deposit date: 2017-02-14 Release date: 2017-04-05 Last modified: 2018-10-03 Method: ELECTRON MICROSCOPY (7.7 Å) Cite: Structural Basis of RNA Polymerase I Transcription Initiation. Cell, 169, 2017
5N5Z	Cryo-EM structure of RNA polymerase I in complex with Rrn3 and Core Factor (Orientation II) Descriptor: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ... Authors: Engel, C, Gubbey, T, Neyer, S, Sainsbury, S, Oberthuer, C, Baejen, C, Bernecky, C, Cramer, P. Deposit date: 2017-02-14 Release date: 2017-04-05 Last modified: 2018-10-03 Method: ELECTRON MICROSCOPY (7.7 Å) Cite: Structural Basis of RNA Polymerase I Transcription Initiation. Cell, 169, 2017
5MPC	26S proteasome in presence of BeFx (s4) Descriptor: 26S protease regulatory subunit 4 homolog, 26S protease regulatory subunit 6A, 26S protease regulatory subunit 6B homolog, ... Authors: Wehmer, M, Rudack, T, Beck, F, Aufderheide, A, Pfeifer, G, Plitzko, J.M, Foerster, F, Schulten, K, Baumeister, W, Sakata, E. Deposit date: 2016-12-16 Release date: 2017-03-08 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (7.7 Å) Cite: Structural insights into the functional cycle of the ATPase module of the 26S proteasome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7AP9	Atomic structure of the poxvirus initially transcribing complex in conformation 3 Descriptor: DNA-directed RNA polymerase, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... Authors: Grimm, C, Bartuli, J, Fischer, U. Deposit date: 2020-10-16 Release date: 2021-10-06 Last modified: 2021-10-20 Method: ELECTRON MICROSCOPY (3.01 Å) Cite: Structural basis of the complete poxvirus transcription initiation process. Nat.Struct.Mol.Biol., 28, 2021
2PA8	X-Ray Crystal Structure of the D/L Subcomplex of the Sulfolobus Solfataricus RNA polymerase Descriptor: DNA-directed RNA polymerase subunit D, DNA-directed RNA polymerase subunit L, FE3-S4 CLUSTER, ... Authors: Hirata, A, Murakami, K.S. Deposit date: 2007-03-27 Release date: 2008-02-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.76 Å) Cite: The X-ray crystal structure of RNA polymerase from Archaea. Nature, 451, 2008
2PMZ	Archaeal RNA polymerase from Sulfolobus solfataricus Descriptor: DNA-directed RNA polymerase subunit A, DNA-directed RNA polymerase subunit A", DNA-directed RNA polymerase subunit B, ... Authors: Murakami, K.S. Deposit date: 2007-04-23 Release date: 2008-02-12 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.4 Å) Cite: The X-ray crystal structure of RNA polymerase from Archaea Nature, 451, 2008
6A35	Crystal structure of 5-methylthioribose 1-phosphate isomerase from Pyrococcus horikoshii OT3 - Form II Descriptor: Putative methylthioribose-1-phosphate isomerase Authors: Kanaujia, S.P, Gogoi, P, Mordina, P. Deposit date: 2018-06-14 Release date: 2018-12-12 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Structural insights into the catalytic mechanism of 5-methylthioribose 1-phosphate isomerase. J. Struct. Biol., 205, 2019
6A34	Crystal structure of 5-methylthioribose 1-phosphate isomerase from Pyrococcus horikoshii OT3 - Form I Descriptor: HEXANE-1,6-DIOL, Putative methylthioribose-1-phosphate isomerase Authors: Kanaujia, S.P, Gogoi, P, Mordina, P. Deposit date: 2018-06-14 Release date: 2018-12-12 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural insights into the catalytic mechanism of 5-methylthioribose 1-phosphate isomerase. J. Struct. Biol., 205, 2019
5ZCY	Crystal structure of archaeal translation initiation factor 1 at 1.5 Angstroms resolution Descriptor: NITRATE ION, NITRITE ION, Protein translation factor SUI1 homolog Authors: Gogoi, P, Kanaujia, S.P. Deposit date: 2018-02-22 Release date: 2018-05-02 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Archaeal and eukaryal translation initiation factor 1 differ in their RNA interacting loops. FEBS Lett., 592, 2018
6A4J	Crystal structure of Thioredoxin reductase 2 from Staphylococcus aureus Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase Authors: Bose, M, Bhattacharyya, S, Ghosh, A.K, Das, A.K. Deposit date: 2018-06-20 Release date: 2018-07-11 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Elucidation of the mechanism of disulfide exchange between staphylococcal thioredoxin2 and thioredoxin reductase2: A structural insight. Biochimie, 160, 2019
6DF4	TAF1-BD2 in complex with Cpd8 (6-(but-3-en-1-yl)-4-(3-(morpholine-4-carbonyl)phenyl)-1,6-dihydro-7H-pyrrolo[2,3-c]pyridin-7-one) Descriptor: 6-(but-3-en-1-yl)-4-[3-(morpholine-4-carbonyl)phenyl]-1,6-dihydro-7H-pyrrolo[2,3-c]pyridin-7-one, Transcription initiation factor TFIID subunit Authors: Murray, J.M, Tang, Y. Deposit date: 2018-05-14 Release date: 2018-10-31 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.3 Å) Cite: GNE-371, a Potent and Selective Chemical Probe for the Second Bromodomains of Human Transcription-Initiation-Factor TFIID Subunit 1 and Transcription-Initiation-Factor TFIID Subunit 1-like. J. Med. Chem., 61, 2018
6DF7	TAF1-BD2 in complex with Cpd27 (6-(but-3-en-1-yl)-4-(1-methyl-6-(morpholine-4-carbonyl)-1H-benzo[d]imidazol-4-yl)-1,6-dihydro-7H-pyrrolo[2,3-c]pyridin-7-one) Descriptor: 6-(but-3-en-1-yl)-4-[1-methyl-6-(morpholine-4-carbonyl)-1H-benzimidazol-4-yl]-1,6-dihydro-7H-pyrrolo[2,3-c]pyridin-7-one, Transcription initiation factor TFIID subunit Authors: Murray, J.M. Deposit date: 2018-05-14 Release date: 2018-11-14 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2 Å) Cite: GNE-371, a Potent and Selective Chemical Probe for the Second Bromodomains of Human Transcription-Initiation-Factor TFIID Subunit 1 and Transcription-Initiation-Factor TFIID Subunit 1-like. J. Med. Chem., 61, 2018
317D	STRUCTURE OF D(CCTAGGG): COMPARISON WITH NINE ISOMORPHOUS OCTAMER SEQUENCES REVEALS FOUR DISTINCT PATTERNS OF SEQUENCE-DEPENDENT INTERMOLECULAR INTERACTIONS Descriptor: DNA (5'-D(*CP*CP*CP*TP*AP*GP*GP*G)-3') Authors: Tippin, D.B, Sundaralingam, M. Deposit date: 1997-03-17 Release date: 1997-05-22 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure of d(CCCTAGGG): comparison with nine isomorphous octamer sequences reveals four distinct patterns of sequence-dependent intermolecular interactions. Acta Crystallogr.,Sect.D, 52, 1996
6FVU	26S proteasome, s2 state Descriptor: 26S proteasome complex subunit SEM1, 26S proteasome regulatory subunit 4 homolog, 26S proteasome regulatory subunit 6A, ... Authors: Eisele, M.R, Reed, R.G, Rudack, T, Schweitzer, A, Beck, F, Nagy, I, Pfeifer, G, Plitzko, J.M, Baumeister, W, Tomko, R.J, Sakata, E. Deposit date: 2018-03-05 Release date: 2018-08-22 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Expanded Coverage of the 26S Proteasome Conformational Landscape Reveals Mechanisms of Peptidase Gating. Cell Rep, 24, 2018

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