Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7VFR
DownloadVisualize
BU of 7vfr by Molmil
GltA N83K mutant from Bifidobacterium infantis JCM 1222 complexed with lacto-N-tetraose
Descriptor: Extracellular solute-binding protein, family 1, SULFATE ION, ...
Authors:Sato, M, Sakanaka, M, Katayama, T, Fushinobu, S.
Deposit date:2021-09-13
Release date:2022-09-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Short stretch sequence of a milk oligosaccharide transporter represents the phenotypic selection trajectory in infant gut microbiome
To Be Published
7VFQ
DownloadVisualize
BU of 7vfq by Molmil
Wild type GltA from Bifidobacterium infantis JCM 1222 complexed with lacto-N-tetraose
Descriptor: Extracellular solute-binding protein, family 1, SULFATE ION, ...
Authors:Sato, M, Sakanaka, M, Katayama, T, Fushinobu, S.
Deposit date:2021-09-13
Release date:2022-09-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Short stretch sequence of a milk oligosaccharide transporter represents the phenotypic selection trajectory in infant gut microbiome
To Be Published
6ZW1
DownloadVisualize
BU of 6zw1 by Molmil
X-ray structure of Danio rerio histone deacetylase 6 (HDAC6) CD2 in complex with an inhibitor SW101
Descriptor: 1-[[4-(oxidanylcarbamoyl)phenyl]methyl]-3,4-dihydro-2~{H}-quinoline-6-carboxamide, GLYCEROL, Histone deacetylase 6, ...
Authors:Barinka, C, Motlova, L, Ustinova, K.
Deposit date:2020-07-27
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Tetrahydroquinoline-Capped Histone Deacetylase 6 Inhibitor SW-101 Ameliorates Pathological Phenotypes in a Charcot-Marie-Tooth Type 2A Mouse Model.
J.Med.Chem., 64, 2021
4EOI
DownloadVisualize
BU of 4eoi by Molmil
Thr 160 phosphorylated CDK2 K89D, Q131E - human cyclin A3 complex with the inhibitor RO3306
Descriptor: (5E)-5-(quinolin-6-ylmethylidene)-2-[(thiophen-2-ylmethyl)amino]-1,3-thiazol-4(5H)-one, Cyclin-A2, Cyclin-dependent kinase 2, ...
Authors:Echalier, A, Cot, E, Camasses, A, Hodimont, E, Hoh, F, Sheinerman, F, Krasinska, L, Fisher, D.
Deposit date:2012-04-14
Release date:2013-02-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:An integrated chemical biology approach provides insight into Cdk2 functional redundancy and inhibitor sensitivity.
Chem.Biol., 19, 2012
4EOP
DownloadVisualize
BU of 4eop by Molmil
Thr 160 phosphorylated CDK2 Q131E - human cyclin A3 complex with the inhibitor RO3306
Descriptor: (5E)-5-(quinolin-6-ylmethylidene)-2-[(thiophen-2-ylmethyl)amino]-1,3-thiazol-4(5H)-one, Cyclin-A2, Cyclin-dependent kinase 2, ...
Authors:Echalier, A, Cot, E, Camasses, A, Hodimont, E, Hoh, F, Sheinerman, F, Krasinska, L, Fisher, D.
Deposit date:2012-04-14
Release date:2013-02-06
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:An integrated chemical biology approach provides insight into Cdk2 functional redundancy and inhibitor sensitivity.
Chem.Biol., 19, 2012
4EOO
DownloadVisualize
BU of 4eoo by Molmil
Thr 160 phosphorylated CDK2 Q131E - human cyclin A3 complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclin-A2, Cyclin-dependent kinase 2, ...
Authors:Echalier, A, Cot, E, Camasses, A, Hodimont, E, Hoh, F, Sheinerman, F, Krasinska, L, Fisher, D.
Deposit date:2012-04-14
Release date:2013-02-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An integrated chemical biology approach provides insight into Cdk2 functional redundancy and inhibitor sensitivity.
Chem.Biol., 19, 2012
8OW2
DownloadVisualize
BU of 8ow2 by Molmil
Crystal structure of the p110alpha catalytic subunit from homo sapiens in complex with activator 1938
Descriptor: 1-[7-[[2-[[4-(4-ethylpiperazin-1-yl)phenyl]amino]pyridin-4-yl]amino]-2,3-dihydroindol-1-yl]ethanone, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Gong, G.Q, Bellini, D, Vanhaesebroeck, B, Williams, R.L.
Deposit date:2023-04-26
Release date:2023-05-24
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:A small-molecule PI3K alpha activator for cardioprotection and neuroregeneration.
Nature, 618, 2023
6LVV
DownloadVisualize
BU of 6lvv by Molmil
N, N-dimethylformamidase
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, N,N-dimethylformamidase large subunit, ...
Authors:Arya, C.K, Ramaswamy, S, Kutti, R.V, Gurunath, R.
Deposit date:2020-02-05
Release date:2020-08-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A 2-Tyr-1-carboxylate Mononuclear Iron Center Forms the Active Site of a Paracoccus Dimethylformamidase.
Angew.Chem.Int.Ed.Engl., 59, 2020
3DOG
DownloadVisualize
BU of 3dog by Molmil
Structure of Thr 160 phosphorylated CDK2/cyclin A in complex with the inhibitor N-&-N1
Descriptor: (2R)-2-{[4-(benzylamino)-8-(1-methylethyl)pyrazolo[1,5-a][1,3,5]triazin-2-yl]amino}butan-1-ol, Cell division protein kinase 2, Cyclin-A2, ...
Authors:Echalier, A, Endicott, J.
Deposit date:2008-07-04
Release date:2008-09-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:N-&-N, a new class of cell death-inducing kinase inhibitors derived from the purine roscovitine.
Mol.Cancer Ther., 7, 2008
6J7E
DownloadVisualize
BU of 6j7e by Molmil
Crystal Structure of Central domain of FleQ in complex with ATPgS and Mg
Descriptor: GLYCEROL, MAGNESIUM ION, Nitrogen assimilation regulatory protein, ...
Authors:Banerjee, P, Chanchal, Jain, D.
Deposit date:2019-01-18
Release date:2019-11-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Sensor I Regulated ATPase Activity of FleQ Is Essential for Motility to Biofilm Transition inPseudomonas aeruginosa.
Acs Chem.Biol., 14, 2019
4EOJ
DownloadVisualize
BU of 4eoj by Molmil
Thr 160 phosphorylated CDK2 H84S, Q85M, K89D - human cyclin A3 complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclin-A2, Cyclin-dependent kinase 2, ...
Authors:Echalier, A, Cot, E, Camasses, A, Hodimont, E, Hoh, F, Sheinerman, F, Krasinska, L, Fisher, D.
Deposit date:2012-04-14
Release date:2013-02-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:An integrated chemical biology approach provides insight into Cdk2 functional redundancy and inhibitor sensitivity.
Chem.Biol., 19, 2012
4WWL
DownloadVisualize
BU of 4wwl by Molmil
E. coli 5'-nucleotidase mutant I521C labeled with MTSL (intermediate form)
Descriptor: CARBONATE ION, GLYCEROL, Protein UshA, ...
Authors:Krug, U, Paithankar, K.S, Schultz-Heienbrok, R, Strater, N.
Deposit date:2014-11-11
Release date:2014-11-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:E. coli 5'-nucleotidase mutant I521C labeled with MTSL (intermediate form)
To Be Published
7PTK
DownloadVisualize
BU of 7ptk by Molmil
Young conformer of a 6-helix bundle of RNA with clasp
Descriptor: RNA
Authors:McRae, E.K.S, Andersen, E.S.
Deposit date:2021-09-27
Release date:2022-10-05
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (5.18 Å)
Cite:Structure, folding and flexibility of co-transcriptional RNA origami.
Nat Nanotechnol, 18, 2023
6G37
DownloadVisualize
BU of 6g37 by Molmil
Crystal structure of haspin in complex with 5-fluorotubercidin
Descriptor: 5-fluorotubercidin, PHOSPHATE ION, Serine/threonine-protein kinase haspin
Authors:Heroven, C, Chaikuad, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2018-03-24
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Halogen-Aromatic pi Interactions Modulate Inhibitor Residence Times.
Angew. Chem. Int. Ed. Engl., 57, 2018
6G3A
DownloadVisualize
BU of 6g3a by Molmil
Crystal structure of haspin F605T mutant in complex with 5-iodotubercidin
Descriptor: (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL, DIMETHYL SULFOXIDE, IODIDE ION, ...
Authors:Heroven, C, Chaikuad, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2018-03-24
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Halogen-Aromatic pi Interactions Modulate Inhibitor Residence Times.
Angew. Chem. Int. Ed. Engl., 57, 2018
6G34
DownloadVisualize
BU of 6g34 by Molmil
Crystal structure of haspin in complex with 5-iodotubercidin
Descriptor: (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, IODIDE ION, ...
Authors:Heroven, C, Chaikuad, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2018-03-24
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Halogen-Aromatic pi Interactions Modulate Inhibitor Residence Times.
Angew. Chem. Int. Ed. Engl., 57, 2018
6G38
DownloadVisualize
BU of 6g38 by Molmil
Crystal structure of haspin in complex with tubercidin
Descriptor: '2-(4-AMINO-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DIMETHYL SULFOXIDE, ...
Authors:Heroven, C, Chaikuad, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2018-03-24
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Halogen-Aromatic pi Interactions Modulate Inhibitor Residence Times.
Angew. Chem. Int. Ed. Engl., 57, 2018
6G35
DownloadVisualize
BU of 6g35 by Molmil
Crystal structure of haspin in complex with 5-bromotubercidin
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5-bromotubercidin, BROMIDE ION, ...
Authors:Heroven, C, Chaikuad, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2018-03-24
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Halogen-Aromatic pi Interactions Modulate Inhibitor Residence Times.
Angew. Chem. Int. Ed. Engl., 57, 2018
6G39
DownloadVisualize
BU of 6g39 by Molmil
Crystal structure of haspin F605Y mutant in complex with 5-iodotubercidin
Descriptor: (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL, (4R)-2-METHYLPENTANE-2,4-DIOL, IODIDE ION, ...
Authors:Heroven, C, Chaikuad, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2018-03-24
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Halogen-Aromatic pi Interactions Modulate Inhibitor Residence Times.
Angew. Chem. Int. Ed. Engl., 57, 2018
6DRR
DownloadVisualize
BU of 6drr by Molmil
Crystal structure of Cj0485 dehydrogenase
Descriptor: 1,2-ETHANEDIOL, Short-chain dehydrogenase
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2018-06-12
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:The gastrointestinal pathogen Campylobacter jejuni metabolizes sugars with potential help from commensal Bacteroides vulgatus.
Commun Biol, 3, 2020
6G36
DownloadVisualize
BU of 6g36 by Molmil
Crystal structure of haspin in complex with 5-chlorotubercidin
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5-chlorotubercidin, COBALT (II) ION, ...
Authors:Heroven, C, Chaikuad, A, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2018-03-24
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Halogen-Aromatic pi Interactions Modulate Inhibitor Residence Times.
Angew. Chem. Int. Ed. Engl., 57, 2018
6DS1
DownloadVisualize
BU of 6ds1 by Molmil
Crystal structure of Cj0485 dehydrogenase in complex with NADP+
Descriptor: GLYCEROL, MAGNESIUM ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2018-06-13
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.119 Å)
Cite:The gastrointestinal pathogen Campylobacter jejuni metabolizes sugars with potential help from commensal Bacteroides vulgatus.
Commun Biol, 3, 2020
6H35
DownloadVisualize
BU of 6h35 by Molmil
Myxococcus xanthus MglA bound to GDP and Pi with mixed inactive and active switch region conformations
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GUANOSINE-5'-DIPHOSPHATE, Mutual gliding-motility protein MglA, ...
Authors:Varela, P.F, Galicia, C, Cherfils, J.
Deposit date:2018-07-17
Release date:2019-12-04
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:MglA functions as a three-state GTPase to control movement reversals of Myxococcus xanthus.
Nat Commun, 10, 2019
8AQH
DownloadVisualize
BU of 8aqh by Molmil
NanoLuc-Y94A luciferase mutant
Descriptor: NanoLuc luciferase
Authors:Nemergut, M, Marek, M.
Deposit date:2022-08-12
Release date:2023-08-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.798 Å)
Cite:Illuminating the mechanism and allosteric behavior of NanoLuc luciferase.
Nat Commun, 14, 2023
8AQ6
DownloadVisualize
BU of 8aq6 by Molmil
NanoLuc luciferase with bound furimamide in surface allosteric site
Descriptor: CHLORIDE ION, GLYCEROL, N-(3-Benzyl-5-phenylpyrazin-2-yl)-2-(furan-2-yl)acetamide, ...
Authors:Nemergut, M, Marek, M.
Deposit date:2022-08-11
Release date:2023-08-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Illuminating the mechanism and allosteric behavior of NanoLuc luciferase.
Nat Commun, 14, 2023

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon